ScarletDeblendConfig¶

class lsst.meas.extensions.scarlet.ScarletDeblendConfig¶

Bases: lsst.pex.config.Config

MultibandDeblendConfig

Configuration for the multiband deblender. The parameters are organized by the parameter types, which are - Stopping Criteria: Used to determine if the fit has converged - Position Fitting Criteria: Used to fit the positions of the peaks - Constraints: Used to apply constraints to the peaks and their components - Other: Parameters that don’t fit into the above categories

Attributes Summary

`badMask`	Whether or not to process isolated sources in the deblender (`List`, default `['BAD', 'CR', 'NO_DATA', 'SAT', 'SUSPECT']`)
`catchFailures`	If True, catch exceptions thrown by the deblender, log them, and set a flag on the parent, instead of letting them propagate up (`bool`, default `False`)
`exactLipschitz`	Calculate exact Lipschitz constant in every step(True) or only calculate the approximateLipschitz constant with significant changes in A,S(False) (`bool`, default `True`)
`history`
`maskLimits`	Mask planes with the corresponding limit on the fraction of masked pixels.
`maxFootprintArea`	Maximum area for footprints before they are ignored as large; non-positive means no threshold applied (`int`, default `1000000`)
`maxFootprintSize`	Maximum linear dimension for footprints before they are ignored as large; non-positive means no threshold applied (`int`, default `0`)
`maxIter`	Maximum number of iterations to deblend a single parent (`int`, default `200`)
`maxNumberOfPeaks`	Only deblend the brightest maxNumberOfPeaks peaks in the parent (<= 0: unlimited) (`int`, default `0`)
`minFootprintAxisRatio`	Minimum axis ratio for footprints before they are ignored as large; non-positive means no threshold applied (`float`, default `0.0`)
`monotonic`	Make models monotonic (`bool`, default `True`)
`notDeblendedMask`	Mask name for footprints not deblended, or None (`str`, default `'NOT_DEBLENDED'`)
`processSingles`	Whether or not to process isolated sources in the deblender (`bool`, default `False`)
`propagateAllPeaks`	Guarantee that all peaks produce a child source.
`recenterPeriod`	Number of iterations between recentering (`int`, default `5`)
`relativeError`	Relative error to use when determining stopping criteria (`float`, default `0.01`)
`saveTemplates`	Whether or not to save the SEDs and templates (`bool`, default `True`)
`sparse`	Make models compact and sparse (`bool`, default `True`)
`statsMask`	Mask planes to ignore when performing statistics (`List`, default `['SAT', 'INTRP', 'NO_DATA']`)
`storeHistory`	Whether or not to store the history for each source (`bool`, default `False`)
`symmetric`	Make models symmetric (`bool`, default `True`)
`symmetryThresh`	Strictness of symmetry, from0 (no symmetry enforced) to1 (perfect symmetry required).If ‘S’ is not in `constraints`, this argument is ignored (`float`, default `1.0`)
`usePsfConvolution`	Whether or not to convolve the morphology with thePSF in each band or use the same morphology in all bands (`bool`, default `True`)
`useWeights`	Use inverse variance as deblender weights (`bool`, default `False`)

Methods Summary

`compare`(other[, shortcut, rtol, atol, output])	Compare this configuration to another `Config` for equality.
`formatHistory`(name, **kwargs)	Format a configuration field’s history to a human-readable format.
`freeze`()	Make this config, and all subconfigs, read-only.
`items`()	Get configurations as `(field name, field value)` pairs.
`iteritems`()	Iterate over (field name, field value) pairs.
`iterkeys`()	Iterate over field names
`itervalues`()	Iterate over field values.
`keys`()	Get field names.
`load`(filename[, root])	Modify this config in place by executing the Python code in a configuration file.
`loadFromStream`(stream[, root, filename])	Modify this Config in place by executing the Python code in the provided stream.
`names`()	Get all the field names in the config, recursively.
`save`(filename[, root])	Save a Python script to the named file, which, when loaded, reproduces this config.
`saveToStream`(outfile[, root])	Save a configuration file to a stream, which, when loaded, reproduces this config.
`setDefaults`()	Subclass hook for computing defaults.
`toDict`()	Make a dictionary of field names and their values.
`update`(**kw)	Update values of fields specified by the keyword arguments.
`validate`()	Validate the Config, raising an exception if invalid.
`values`()	Get field values.

Attributes Documentation

badMask¶: Whether or not to process isolated sources in the deblender (List, default ['BAD', 'CR', 'NO_DATA', 'SAT', 'SUSPECT'])

catchFailures¶: If True, catch exceptions thrown by the deblender, log them, and set a flag on the parent, instead of letting them propagate up (bool, default False)

exactLipschitz¶: Calculate exact Lipschitz constant in every step(True) or only calculate the approximateLipschitz constant with significant changes in A,S(False) (bool, default True)

history¶

maskLimits¶: Mask planes with the corresponding limit on the fraction of masked pixels. Sources violating this limit will not be deblended. (Dict, default {})

maxFootprintArea¶: Maximum area for footprints before they are ignored as large; non-positive means no threshold applied (int, default 1000000)

maxFootprintSize¶: Maximum linear dimension for footprints before they are ignored as large; non-positive means no threshold applied (int, default 0)

maxIter¶: Maximum number of iterations to deblend a single parent (int, default 200)

maxNumberOfPeaks¶: Only deblend the brightest maxNumberOfPeaks peaks in the parent (<= 0: unlimited) (int, default 0)

minFootprintAxisRatio¶: Minimum axis ratio for footprints before they are ignored as large; non-positive means no threshold applied (float, default 0.0)

monotonic¶: Make models monotonic (bool, default True)

notDeblendedMask¶: Mask name for footprints not deblended, or None (str, default 'NOT_DEBLENDED')

processSingles¶: Whether or not to process isolated sources in the deblender (bool, default False)

propagateAllPeaks¶: Guarantee that all peaks produce a child source. (bool, default False)

recenterPeriod¶: Number of iterations between recentering (int, default 5)

relativeError¶: Relative error to use when determining stopping criteria (float, default 0.01)

saveTemplates¶: Whether or not to save the SEDs and templates (bool, default True)

sparse¶: Make models compact and sparse (bool, default True)

statsMask¶: Mask planes to ignore when performing statistics (List, default ['SAT', 'INTRP', 'NO_DATA'])

storeHistory¶: Whether or not to store the history for each source (bool, default False)

symmetric¶: Make models symmetric (bool, default True)

symmetryThresh¶: Strictness of symmetry, from0 (no symmetry enforced) to1 (perfect symmetry required).If ‘S’ is not in constraints, this argument is ignored (float, default 1.0)

usePsfConvolution¶: Whether or not to convolve the morphology with thePSF in each band or use the same morphology in all bands (bool, default True)

useWeights¶: Use inverse variance as deblender weights (bool, default False)

Methods Documentation

compare(other, shortcut=True, rtol=1e-08, atol=1e-08, output=None)¶

Compare this configuration to another Config for equality.

Parameters

otherlsst.pex.config.Config: Other Config object to compare against this config.
shortcutbool, optional: If True, return as soon as an inequality is found. Default is True.
rtolfloat, optional: Relative tolerance for floating point comparisons.
atolfloat, optional: Absolute tolerance for floating point comparisons.
outputcallable, optional: A callable that takes a string, used (possibly repeatedly) to report inequalities.

Returns

isEqualbool: True when the two lsst.pex.config.Config instances are equal. False if there is an inequality.

See also

lsst.pex.config.compareConfigs

Notes

Unselected targets of RegistryField fields and unselected choices of ConfigChoiceField fields are not considered by this method.

Floating point comparisons are performed by numpy.allclose.

formatHistory(name, **kwargs)¶

Format a configuration field’s history to a human-readable format.

Parameters

namestr: Name of a Field in this config.
kwargs: Keyword arguments passed to lsst.pex.config.history.format.

Returns

historystr: A string containing the formatted history.

See also

lsst.pex.config.history.format

freeze()¶: Make this config, and all subconfigs, read-only.

items()¶

Get configurations as (field name, field value) pairs.

Returns

itemslist

List of tuples for each configuration. Tuple items are:

Field name.
Field value.

See also

lsst.pex.config.Config.iteritems

iteritems()¶

Iterate over (field name, field value) pairs.

Yields

itemtuple

Tuple items are:

Field name.
Field value.

See also

lsst.pex.config.Config.items

iterkeys()¶

Iterate over field names

Yields

keystr: A field’s key (attribute name).

See also

lsst.pex.config.Config.values

itervalues()¶

Iterate over field values.

Yields

valueobj: A field value.

See also

lsst.pex.config.Config.values

keys()¶

Get field names.

Returns

nameslist: List of lsst.pex.config.Field names.

See also

lsst.pex.config.Config.iterkeys

load(filename, root='config')¶

Modify this config in place by executing the Python code in a configuration file.

Parameters

filenamestr

Name of the configuration file. A configuration file is Python module.

rootstr, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

Deprecated: For backwards compatibility, older config files that use root="root" instead of root="config" will be loaded with a warning printed to sys.stderr. This feature will be removed at some point.

See also

lsst.pex.config.Config.loadFromStream, lsst.pex.config.Config.save, lsst.pex.config.Config.saveFromStream

loadFromStream(stream, root='config', filename=None)¶

Modify this Config in place by executing the Python code in the provided stream.

Parameters

streamfile-like object, str, or compiled string

Stream containing configuration override code.

rootstr, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

Deprecated: For backwards compatibility, older config files that use root="root" instead of root="config" will be loaded with a warning printed to sys.stderr. This feature will be removed at some point.

filenamestr, optional

Name of the configuration file, or None if unknown or contained in the stream. Used for error reporting.

See also

lsst.pex.config.Config.load, lsst.pex.config.Config.save, lsst.pex.config.Config.saveFromStream

names()¶

Get all the field names in the config, recursively.

Returns

nameslist of str: Field names.

save(filename, root='config')¶

Save a Python script to the named file, which, when loaded, reproduces this config.

Parameters

filenamestr: Desination filename of this configuration.
rootstr, optional: Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

saveToStream(outfile, root='config')¶

Save a configuration file to a stream, which, when loaded, reproduces this config.

Parameters

outfilefile-like object: Destination file object write the config into. Accepts strings not bytes.
root: Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

setDefaults()¶

Subclass hook for computing defaults.

Notes

Derived Config classes that must compute defaults rather than using the Field instances’s defaults should do so here. To correctly use inherited defaults, implementations of setDefaults must call their base class’s setDefaults.

toDict()¶

Make a dictionary of field names and their values.

Returns

dict_dict: Dictionary with keys that are Field names. Values are Field values.

See also

lsst.pex.config.Field.toDict

Notes

This method uses the toDict method of individual fields. Subclasses of Field may need to implement a toDict method for this method to work.

update(**kw)¶

Update values of fields specified by the keyword arguments.

Parameters

kw: Keywords are configuration field names. Values are configuration field values.

Notes

The __at and __label keyword arguments are special internal keywords. They are used to strip out any internal steps from the history tracebacks of the config. Do not modify these keywords to subvert a Config instance’s history.

Examples

This is a config with three fields:

>>> from lsst.pex.config import Config, Field
>>> class DemoConfig(Config):
...     fieldA = Field(doc='Field A', dtype=int, default=42)
...     fieldB = Field(doc='Field B', dtype=bool, default=True)
...     fieldC = Field(doc='Field C', dtype=str, default='Hello world')
...
>>> config = DemoConfig()

These are the default values of each field:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 42
fieldB: True
fieldC: 'Hello world'

Using this method to update fieldA and fieldC:

>>> config.update(fieldA=13, fieldC='Updated!')

Now the values of each field are:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 13
fieldB: True
fieldC: 'Updated!'

validate()¶

Validate the Config, raising an exception if invalid.

Raises

lsst.pex.config.FieldValidationError: Raised if verification fails.

Notes

The base class implementation performs type checks on all fields by calling their validate methods.

Complex single-field validation can be defined by deriving new Field types. For convenience, some derived lsst.pex.config.Field-types (ConfigField and ConfigChoiceField) are defined in lsst.pex.config that handle recursing into subconfigs.

Inter-field relationships should only be checked in derived Config classes after calling this method, and base validation is complete.

values()¶

Get field values.

Returns

valueslist: List of field values.

See also

lsst.pex.config.Config.itervalues

Navigation

ScarletDeblendConfig¶