CfhtIsrTaskConfig¶
- 
class lsst.obs.cfht.cfhtIsrTask.CfhtIsrTaskConfig¶
- Bases: - lsst.ip.isr.isrTask.IsrTaskConfig- Attributes Summary - assembleCcd- CCD assembly task ( - ConfigurableInstance, default- <class 'lsst.ip.isr.assembleCcdTask.AssembleCcdConfig'>)- badStatistic- How to estimate the average value for BAD regions. - biasDataProductName- Name of the bias data product ( - str, default- 'bias')- brighterFatterApplyGain- Should the gain be applied when applying the brighter fatter correction? ( - bool, default- True)- brighterFatterKernelFile- Kernel file used for the brighter fatter correction ( - str, default- '')- brighterFatterLevel- The level at which to correct for brighter-fatter. - brighterFatterMaxIter- Maximum number of iterations for the brighter fatter correction ( - int, default- 10)- brighterFatterThreshold- Threshold used to stop iterating the brighter fatter correction. - connections- Configurations describing the connections of the PipelineTask to datatypes ( - Connections, default- <class 'lsst.pipe.base.config.Connections'>)- crosstalk- Intra-CCD crosstalk correction ( - ConfigurableInstance, default- <class 'lsst.ip.isr.crosstalk.CrosstalkConfig'>)- darkDataProductName- Name of the dark data product ( - str, default- 'dark')- datasetType- Dataset type for input data; users will typically leave this alone, but camera-specific ISR tasks will override it ( - str, default- 'raw')- defaultFluxMag0T1- Default value for fluxMag0T1 (for an unrecognized filter). - doAddDistortionModel- Apply a distortion model based on camera geometry to the WCS? Deprecated: Camera geometry is incorporated when reading the raw files. - doApplyGains- Correct the amplifiers for their gains instead of applying flat correction ( - bool, default- False)- doAssembleCcd- Assemble amp-level exposures into a ccd-level exposure? ( - bool, default- True)- doAssembleIsrExposures- Assemble amp-level calibration exposures into ccd-level exposure? ( - bool, default- False)- doAttachTransmissionCurve- Construct and attach a wavelength-dependent throughput curve for this CCD image? ( - bool, default- False)- doBias- Apply bias frame correction? ( - bool, default- True)- doBrighterFatter- Apply the brighter fatter correction ( - bool, default- False)- doCameraSpecificMasking- Mask camera-specific bad regions? ( - bool, default- False)- doConvertIntToFloat- Convert integer raw images to floating point values? ( - bool, default- True)- doCrosstalk- Apply intra-CCD crosstalk correction? ( - bool, default- False)- doCrosstalkBeforeAssemble- Apply crosstalk correction before CCD assembly, and before trimming? ( - bool, default- False)- doDark- Apply dark frame correction? ( - bool, default- True)- doDefect- Apply correction for CCD defects, e.g. - doEmpiricalReadNoise- Calculate empirical read noise instead of value from AmpInfo data? ( - bool, default- False)- doFlat- Apply flat field correction? ( - bool, default- True)- doFringe- Apply fringe correction? ( - bool, default- True)- doIlluminationCorrection- Perform illumination correction? ( - bool, default- False)- doInterpolate- Interpolate masked pixels? ( - bool, default- True)- doLinearize- Correct for nonlinearity of the detector’s response? ( - bool, default- True)- doMeasureBackground- Measure the background level on the reduced image? ( - bool, default- False)- doNanInterpAfterFlat- If True, ensure we interpolate NaNs after flat-fielding, even if we also have to interpolate them before flat-fielding. - doNanInterpolation- Perform interpolation over pixels masked as NaN? NB: This is independent of doNanMasking; if that is False this plane will likely be blank, resulting in a no-op here. - doNanMasking- Mask NAN pixels? ( - bool, default- True)- doOverscan- Do overscan subtraction? ( - bool, default- True)- doSaturation- Mask saturated pixels? NB: this is totally independent of the interpolation option - this is ONLY setting the bits in the mask. - doSaturationInterpolation- Perform interpolation over pixels masked as saturated? NB: This is independent of doSaturation; if that is False this plane will likely be blank, resulting in a no-op here. - doSaveInterpPixels- Save a copy of the pre-interpolated pixel values? ( - bool, default- False)- doSetBadRegions- Should we set the level of all BAD patches of the chip to the chip’s average value? ( - bool, default- True)- doStrayLight- Subtract stray light in the y-band (due to encoder LEDs)? ( - bool, default- False)- doSuspect- Mask suspect pixels? ( - bool, default- False)- doTrimToMatchCalib- Trim raw data to match calibration bounding boxes? ( - bool, default- False)- doTweakFlat- Tweak flats to match observed amplifier ratios? ( - bool, default- False)- doUseAtmosphereTransmission- Load and use transmission_atmosphere (if doAttachTransmissionCurve is True)? ( - bool, default- True)- doUseFilterTransmission- Load and use transmission_filter (if doAttachTransmissionCurve is True)? ( - bool, default- True)- doUseOpticsTransmission- Load and use transmission_optics (if doAttachTransmissionCurve is True)? ( - bool, default- True)- doUseSensorTransmission- Load and use transmission_sensor (if doAttachTransmissionCurve is True)? ( - bool, default- True)- doVariance- Calculate variance? ( - bool, default- True)- doVignette- Apply vignetting parameters? ( - bool, default- False)- doWidenSaturationTrails- Widen bleed trails based on their width? ( - bool, default- True)- doWrite- Persist postISRCCD? ( - bool, default- True)- expectWcs- Expect input science images to have a WCS (set False for e.g. - fallbackFilterName- Fallback default filter name for calibrations. - flatDataProductName- Name of the flat data product ( - str, default- 'flat')- flatScalingType- The method for scaling the flat on the fly. - flatUserScale- If flatScalingType is ‘USER’ then scale flat by this amount; ignored otherwise ( - float, default- 1.0)- fluxMag0T1- The approximate flux of a zero-magnitude object in a one-second exposure, per filter. - fringe- Fringe subtraction task ( - ConfigurableInstance, default- <class 'lsst.ip.isr.fringe.FringeConfig'>)- fringeAfterFlat- Do fringe subtraction after flat-fielding? ( - bool, default- True)- fwhm- FWHM of PSF in arcseconds. - gain- The gain to use if no Detector is present in the Exposure (ignored if NaN) ( - float, default- nan)- growSaturationFootprintSize- Number of pixels by which to grow the saturation footprints ( - int, default- 1)- history- illumFilters- Only perform illumination correction for these filters. - illumScale- Scale factor for the illumination correction. - illuminationCorrectionDataProductName- Name of the illumination correction data product. - maskListToInterpolate- List of mask planes that should be interpolated. - masking- Masking task. - normalizeGains- Normalize all the amplifiers in each CCD to have the same median value. - numEdgeSuspect- Number of edge pixels to be flagged as untrustworthy. - overscanBiasJump- Fit the overscan in a piecewise-fashion to correct for bias jumps? ( - bool, default- False)- overscanBiasJumpDevices- List of devices that need piecewise overscan correction. - overscanBiasJumpKeyword- Header keyword containing information about devices. - overscanBiasJumpLocation- Location of bias jump along y-axis. - overscanFitType- The method for fitting the overscan bias level. - overscanIsInt- Treat overscan as an integer image for purposes of overscan.FitType=MEDIAN ( - bool, default- True)- overscanMaxDev- Maximum deviation from the median for overscan ( - float, default- 1000.0)- overscanNumLeadingColumnsToSkip- Number of columns to skip in overscan, i.e. - overscanNumSigmaClip- Rejection threshold (sigma) for collapsing overscan before fit ( - float, default- 3.0)- overscanNumTrailingColumnsToSkip- Number of columns to skip in overscan, i.e. - overscanOrder- Order of polynomial or to fit if overscan fit type is a polynomial, or number of spline knots if overscan fit type is a spline. - qa- QA related configuration options. - readNoise- The read noise to use if no Detector is present in the Exposure ( - float, default- 0.0)- safe- Safety margin for CFHT sensors gain determination ( - float, default- 0.95)- saturatedMaskName- Name of mask plane to use in saturation detection and interpolation ( - str, default- 'SAT')- saturation- The saturation level to use if no Detector is present in the Exposure (ignored if NaN) ( - float, default- nan)- saveMetadata- Flag to enable/disable metadata saving for a task, enabled by default. - strayLight- y-band stray light correction ( - ConfigurableInstance, default- <class 'lsst.ip.isr.straylight.StrayLightConfig'>)- suspectMaskName- Name of mask plane to use for suspect pixels ( - str, default- 'SUSPECT')- vignette- Vignetting task. - Methods Summary - compare(other[, shortcut, rtol, atol, output])- Compare this configuration to another - Configfor equality.- formatHistory(name, **kwargs)- Format a configuration field’s history to a human-readable format. - freeze()- Make this config, and all subconfigs, read-only. - items()- Get configurations as - (field name, field value)pairs.- iteritems()- Iterate over (field name, field value) pairs. - iterkeys()- Iterate over field names - itervalues()- Iterate over field values. - keys()- Get field names. - load(filename[, root])- Modify this config in place by executing the Python code in a configuration file. - loadFromStream(stream[, root, filename])- Modify this Config in place by executing the Python code in the provided stream. - names()- Get all the field names in the config, recursively. - save(filename[, root])- Save a Python script to the named file, which, when loaded, reproduces this config. - saveToStream(outfile[, root])- Save a configuration file to a stream, which, when loaded, reproduces this config. - setDefaults()- Subclass hook for computing defaults. - toDict()- Make a dictionary of field names and their values. - update(**kw)- Update values of fields specified by the keyword arguments. - validate()- Validate the Config, raising an exception if invalid. - values()- Get field values. - Attributes Documentation - 
assembleCcd¶
- CCD assembly task ( - ConfigurableInstance, default- <class 'lsst.ip.isr.assembleCcdTask.AssembleCcdConfig'>)
 - 
badStatistic¶
- How to estimate the average value for BAD regions. ( - str, default- 'MEANCLIP')- Allowed values: - 'MEANCLIP'
- Correct using the (clipped) mean of good data
- 'MEDIAN'
- Correct using the median of the good data
- 'None'
- Field is optional
 
 - 
brighterFatterApplyGain¶
- Should the gain be applied when applying the brighter fatter correction? ( - bool, default- True)
 - 
brighterFatterLevel¶
- The level at which to correct for brighter-fatter. ( - str, default- 'DETECTOR')- Allowed values: - 'AMP'
- Every amplifier treated separately.
- 'DETECTOR'
- One kernel per detector
- 'None'
- Field is optional
 
 - 
brighterFatterMaxIter¶
- Maximum number of iterations for the brighter fatter correction ( - int, default- 10)
 - 
brighterFatterThreshold¶
- Threshold used to stop iterating the brighter fatter correction. It is the absolute value of the difference between the current corrected image and the one from the previous iteration summed over all the pixels. ( - float, default- 1000)
 - 
connections¶
- Configurations describing the connections of the PipelineTask to datatypes ( - Connections, default- <class 'lsst.pipe.base.config.Connections'>)
 - 
crosstalk¶
- Intra-CCD crosstalk correction ( - ConfigurableInstance, default- <class 'lsst.ip.isr.crosstalk.CrosstalkConfig'>)
 - 
datasetType¶
- Dataset type for input data; users will typically leave this alone, but camera-specific ISR tasks will override it ( - str, default- 'raw')
 - 
defaultFluxMag0T1¶
- Default value for fluxMag0T1 (for an unrecognized filter). ( - float, default- 158489319246.11172)
 - 
doAddDistortionModel¶
- Apply a distortion model based on camera geometry to the WCS? Deprecated: Camera geometry is incorporated when reading the raw files. This option no longer is used, and will be removed after v19. ( - bool, default- True)
 - 
doApplyGains¶
- Correct the amplifiers for their gains instead of applying flat correction ( - bool, default- False)
 - 
doAssembleIsrExposures¶
- Assemble amp-level calibration exposures into ccd-level exposure? ( - bool, default- False)
 - 
doAttachTransmissionCurve¶
- Construct and attach a wavelength-dependent throughput curve for this CCD image? ( - bool, default- False)
 - 
doCrosstalkBeforeAssemble¶
- Apply crosstalk correction before CCD assembly, and before trimming? ( - bool, default- False)
 - 
doEmpiricalReadNoise¶
- Calculate empirical read noise instead of value from AmpInfo data? ( - bool, default- False)
 - 
doNanInterpAfterFlat¶
- If True, ensure we interpolate NaNs after flat-fielding, even if we also have to interpolate them before flat-fielding. ( - bool, default- False)
 - 
doNanInterpolation¶
- Perform interpolation over pixels masked as NaN? NB: This is independent of doNanMasking; if that is False this plane will likely be blank, resulting in a no-op here. ( - bool, default- True)
 - 
doSaturation¶
- Mask saturated pixels? NB: this is totally independent of the interpolation option - this is ONLY setting the bits in the mask. To have them interpolated make sure doSaturationInterpolation=True ( - bool, default- True)
 - 
doSaturationInterpolation¶
- Perform interpolation over pixels masked as saturated? NB: This is independent of doSaturation; if that is False this plane will likely be blank, resulting in a no-op here. ( - bool, default- True)
 - 
doSetBadRegions¶
- Should we set the level of all BAD patches of the chip to the chip’s average value? ( - bool, default- True)
 - 
doUseAtmosphereTransmission¶
- Load and use transmission_atmosphere (if doAttachTransmissionCurve is True)? ( - bool, default- True)
 - 
doUseFilterTransmission¶
- Load and use transmission_filter (if doAttachTransmissionCurve is True)? ( - bool, default- True)
 - 
doUseOpticsTransmission¶
- Load and use transmission_optics (if doAttachTransmissionCurve is True)? ( - bool, default- True)
 - 
doUseSensorTransmission¶
- Load and use transmission_sensor (if doAttachTransmissionCurve is True)? ( - bool, default- True)
 - 
expectWcs¶
- Expect input science images to have a WCS (set False for e.g. spectrographs). ( - bool, default- True)
 - 
flatScalingType¶
- The method for scaling the flat on the fly. ( - str, default- 'USER')- Allowed values: - 'USER'
- Scale by flatUserScale
- 'MEAN'
- Scale by the inverse of the mean
- 'MEDIAN'
- Scale by the inverse of the median
- 'None'
- Field is optional
 
 - 
flatUserScale¶
- If flatScalingType is ‘USER’ then scale flat by this amount; ignored otherwise ( - float, default- 1.0)
 - 
fluxMag0T1¶
- The approximate flux of a zero-magnitude object in a one-second exposure, per filter. ( - Dict, default- {'Unknown': 158489319246.11172})
 - 
fringe¶
- Fringe subtraction task ( - ConfigurableInstance, default- <class 'lsst.ip.isr.fringe.FringeConfig'>)
 - 
gain¶
- The gain to use if no Detector is present in the Exposure (ignored if NaN) ( - float, default- nan)
 - 
growSaturationFootprintSize¶
- Number of pixels by which to grow the saturation footprints ( - int, default- 1)
 - 
history¶
 - 
illumFilters¶
- Only perform illumination correction for these filters. ( - List, default- [])
 - 
illuminationCorrectionDataProductName¶
- Name of the illumination correction data product. ( - str, default- 'illumcor')
 - 
maskListToInterpolate¶
- List of mask planes that should be interpolated. ( - List, default- ['SAT', 'BAD', 'UNMASKEDNAN'])
 - 
masking¶
- Masking task. ( - ConfigurableInstance, default- <class 'lsst.ip.isr.masking.MaskingConfig'>)
 - 
normalizeGains¶
- Normalize all the amplifiers in each CCD to have the same median value. ( - bool, default- False)
 - 
overscanBiasJump¶
- Fit the overscan in a piecewise-fashion to correct for bias jumps? ( - bool, default- False)
 - 
overscanBiasJumpDevices¶
- List of devices that need piecewise overscan correction. ( - List, default- ())
 - 
overscanBiasJumpKeyword¶
- Header keyword containing information about devices. ( - str, default- 'NO_SUCH_KEY')
 - 
overscanFitType¶
- The method for fitting the overscan bias level. ( - str, default- 'MEDIAN')- Allowed values: - 'POLY'
- Fit ordinary polynomial to the longest axis of the overscan region
- 'CHEB'
- Fit Chebyshev polynomial to the longest axis of the overscan region
- 'LEG'
- Fit Legendre polynomial to the longest axis of the overscan region
- 'NATURAL_SPLINE'
- Fit natural spline to the longest axis of the overscan region
- 'CUBIC_SPLINE'
- Fit cubic spline to the longest axis of the overscan region
- 'AKIMA_SPLINE'
- Fit Akima spline to the longest axis of the overscan region
- 'MEAN'
- Correct using the mean of the overscan region
- 'MEANCLIP'
- Correct using a clipped mean of the overscan region
- 'MEDIAN'
- Correct using the median of the overscan region
- 'None'
- Field is optional
 
 - 
overscanIsInt¶
- Treat overscan as an integer image for purposes of overscan.FitType=MEDIAN ( - bool, default- True)
 - 
overscanNumLeadingColumnsToSkip¶
- Number of columns to skip in overscan, i.e. those closest to amplifier ( - int, default- 0)
 - 
overscanNumSigmaClip¶
- Rejection threshold (sigma) for collapsing overscan before fit ( - float, default- 3.0)
 - 
overscanNumTrailingColumnsToSkip¶
- Number of columns to skip in overscan, i.e. those farthest from amplifier ( - int, default- 0)
 - 
overscanOrder¶
- Order of polynomial or to fit if overscan fit type is a polynomial, or number of spline knots if overscan fit type is a spline. ( - int, default- 1)
 - 
qa¶
- QA related configuration options. ( - IsrQaConfig, default- <class 'lsst.ip.isr.isrQa.IsrQaConfig'>)
 - 
saturatedMaskName¶
- Name of mask plane to use in saturation detection and interpolation ( - str, default- 'SAT')
 - 
saturation¶
- The saturation level to use if no Detector is present in the Exposure (ignored if NaN) ( - float, default- nan)
 - 
saveMetadata¶
- Flag to enable/disable metadata saving for a task, enabled by default. ( - bool, default- True)
 - 
strayLight¶
- y-band stray light correction ( - ConfigurableInstance, default- <class 'lsst.ip.isr.straylight.StrayLightConfig'>)
 - 
vignette¶
- Vignetting task. ( - ConfigurableInstance, default- <class 'lsst.ip.isr.vignette.VignetteConfig'>)
 - Methods Documentation - 
compare(other, shortcut=True, rtol=1e-08, atol=1e-08, output=None)¶
- Compare this configuration to another - Configfor equality.- Parameters: - other : lsst.pex.config.Config
- Other - Configobject to compare against this config.
- shortcut : bool, optional
- If - True, return as soon as an inequality is found. Default is- True.
- rtol : float, optional
- Relative tolerance for floating point comparisons. 
- atol : float, optional
- Absolute tolerance for floating point comparisons. 
- output : callable, optional
- A callable that takes a string, used (possibly repeatedly) to report inequalities. 
 - Returns: - isEqual : bool
- Truewhen the two- lsst.pex.config.Configinstances are equal.- Falseif there is an inequality.
 - See also - Notes - Unselected targets of - RegistryFieldfields and unselected choices of- ConfigChoiceFieldfields are not considered by this method.- Floating point comparisons are performed by - numpy.allclose.
- other : 
 - 
formatHistory(name, **kwargs)¶
- Format a configuration field’s history to a human-readable format. - Parameters: - name : str
- Name of a - Fieldin this config.
- kwargs
- Keyword arguments passed to - lsst.pex.config.history.format.
 - Returns: - history : str
- A string containing the formatted history. 
 - See also 
- name : 
 - 
freeze()¶
- Make this config, and all subconfigs, read-only. 
 - 
items()¶
- Get configurations as - (field name, field value)pairs.- Returns: - items : list
- List of tuples for each configuration. Tuple items are: - Field name.
- Field value.
 
 - See also 
- items : 
 - 
iteritems()¶
- Iterate over (field name, field value) pairs. - Yields: - item : tuple
- Tuple items are: - Field name.
- Field value.
 
 - See also 
- item : 
 - 
itervalues()¶
- Iterate over field values. - Yields: - value : obj
- A field value. 
 - See also 
 - 
keys()¶
- Get field names. - Returns: - names : list
- List of - lsst.pex.config.Fieldnames.
 - See also 
- names : 
 - 
load(filename, root='config')¶
- Modify this config in place by executing the Python code in a configuration file. - Parameters: - filename : str
- Name of the configuration file. A configuration file is Python module. 
- root : str, optional
- Name of the variable in file that refers to the config being overridden. - For example, the value of root is - "config"and the file contains:- config.myField = 5 - Then this config’s field - myFieldis set to- 5.- Deprecated: For backwards compatibility, older config files that use - root="root"instead of- root="config"will be loaded with a warning printed to- sys.stderr. This feature will be removed at some point.
 - See also - lsst.pex.config.Config.loadFromStream,- lsst.pex.config.Config.save,- lsst.pex.config.Config.saveFromStream
- filename : 
 - 
loadFromStream(stream, root='config', filename=None)¶
- Modify this Config in place by executing the Python code in the provided stream. - Parameters: - stream : file-like object, str, or compiled string
- Stream containing configuration override code. 
- root : str, optional
- Name of the variable in file that refers to the config being overridden. - For example, the value of root is - "config"and the file contains:- config.myField = 5 - Then this config’s field - myFieldis set to- 5.- Deprecated: For backwards compatibility, older config files that use - root="root"instead of- root="config"will be loaded with a warning printed to- sys.stderr. This feature will be removed at some point.
- filename : str, optional
- Name of the configuration file, or - Noneif unknown or contained in the stream. Used for error reporting.
 - See also - lsst.pex.config.Config.load,- lsst.pex.config.Config.save,- lsst.pex.config.Config.saveFromStream
- stream : file-like object, 
 - 
names()¶
- Get all the field names in the config, recursively. - Returns: 
 - 
save(filename, root='config')¶
- Save a Python script to the named file, which, when loaded, reproduces this config. - Parameters: - filename : str
- Desination filename of this configuration. 
- root : str, optional
- Name to use for the root config variable. The same value must be used when loading (see - lsst.pex.config.Config.load).
 
- filename : 
 - 
saveToStream(outfile, root='config')¶
- Save a configuration file to a stream, which, when loaded, reproduces this config. - Parameters: - outfile : file-like object
- Destination file object write the config into. Accepts strings not bytes. 
- root
- Name to use for the root config variable. The same value must be used when loading (see - lsst.pex.config.Config.load).
 
 - 
setDefaults()¶
- Subclass hook for computing defaults. - Notes - Derived - Configclasses that must compute defaults rather than using the- Fieldinstances’s defaults should do so here. To correctly use inherited defaults, implementations of- setDefaultsmust call their base class’s- setDefaults.
 - 
toDict()¶
- Make a dictionary of field names and their values. - Returns: - See also - Notes - This method uses the - toDictmethod of individual fields. Subclasses of- Fieldmay need to implement a- toDictmethod for this method to work.
 - 
update(**kw)¶
- Update values of fields specified by the keyword arguments. - Parameters: - kw
- Keywords are configuration field names. Values are configuration field values. 
 - Notes - The - __atand- __labelkeyword arguments are special internal keywords. They are used to strip out any internal steps from the history tracebacks of the config. Do not modify these keywords to subvert a- Configinstance’s history.- Examples - This is a config with three fields: - >>> from lsst.pex.config import Config, Field >>> class DemoConfig(Config): ... fieldA = Field(doc='Field A', dtype=int, default=42) ... fieldB = Field(doc='Field B', dtype=bool, default=True) ... fieldC = Field(doc='Field C', dtype=str, default='Hello world') ... >>> config = DemoConfig() - These are the default values of each field: - >>> for name, value in config.iteritems(): ... print(f"{name}: {value}") ... fieldA: 42 fieldB: True fieldC: 'Hello world' - Using this method to update - fieldAand- fieldC:- >>> config.update(fieldA=13, fieldC='Updated!') - Now the values of each field are: - >>> for name, value in config.iteritems(): ... print(f"{name}: {value}") ... fieldA: 13 fieldB: True fieldC: 'Updated!' 
 - 
validate()¶
- Validate the Config, raising an exception if invalid. - Raises: - lsst.pex.config.FieldValidationError
- Raised if verification fails. 
 - Notes - The base class implementation performs type checks on all fields by calling their - validatemethods.- Complex single-field validation can be defined by deriving new Field types. For convenience, some derived - lsst.pex.config.Field-types (- ConfigFieldand- ConfigChoiceField) are defined in- lsst.pex.configthat handle recursing into subconfigs.- Inter-field relationships should only be checked in derived - Configclasses after calling this method, and base validation is complete.
 
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