MatchedVisitMetricsConfig

class lsst.validate.drp.matchedVisitMetricsTask.MatchedVisitMetricsConfig

Bases: lsst.pex.config.Config

Attributes Summary

brightSnr Minimum PSF signal-to-noise ratio for a star to be considered bright.
datasetName Dataset name to associate metric measuremnts in SQuaSH (str)
doApplyExternalPhotoCalib Whether to apply external photometric calibration via an lsst.afw.image.PhotoCalib object.
doApplyExternalSkyWcs Whether to apply external astrometric calibration via an lsst.afw.geom.SkyWcs object.
externalPhotoCalibName Type of external PhotoCalib if doApplyExternalPhotoCalib is True.
externalSkyWcsName Type of external SkyWcs if doApplyExternalSkyWcs is True.
history
instrumentName Instrument name to associate with verification specifications: e.g.
makeJson Whether to write JSON outputs.
makePlots Whether to write plot outputs.
matchRadius Match radius (arcseconds).
metricsRepository Repository to read metrics and specs from.
outputPrefix Root name for output files: the filter name is appended to this+’_’.
safeSnr Minimum median PSF signal-to-noise ratio for a match to be considered safe.
skipTEx Skip TEx calculations (useful for older catalogs that don’t have PsfShape measurements).
verbose More verbose output during validate calculations.

Methods Summary

compare(other[, shortcut, rtol, atol, output]) Compare this configuration to another Config for equality.
formatHistory(name, **kwargs) Format a configuration field’s history to a human-readable format.
freeze() Make this config, and all subconfigs, read-only.
items() Get configurations as (field name, field value) pairs.
iteritems() Iterate over (field name, field value) pairs.
iterkeys() Iterate over field names
itervalues() Iterate over field values.
keys() Get field names.
load(filename[, root]) Modify this config in place by executing the Python code in a configuration file.
loadFromStream(stream[, root, filename]) Modify this Config in place by executing the Python code in the provided stream.
names() Get all the field names in the config, recursively.
save(filename[, root]) Save a Python script to the named file, which, when loaded, reproduces this config.
saveToStream(outfile[, root]) Save a configuration file to a stream, which, when loaded, reproduces this config.
setDefaults() Subclass hook for computing defaults.
toDict() Make a dictionary of field names and their values.
update(**kw) Update values of fields specified by the keyword arguments.
validate() Validate the Config, raising an exception if invalid.
values() Get field values.

Attributes Documentation

brightSnr

Minimum PSF signal-to-noise ratio for a star to be considered bright. (float, default 100)

datasetName

Dataset name to associate metric measuremnts in SQuaSH (str)

doApplyExternalPhotoCalib

Whether to apply external photometric calibration via an lsst.afw.image.PhotoCalib object. Uses the externalPhotoCalibName field to determine which calibration to load. (bool, default False)

doApplyExternalSkyWcs

Whether to apply external astrometric calibration via an lsst.afw.geom.SkyWcs object. Uses the externalSkyWcsName field to determine which calibration to load. (bool, default False)

externalPhotoCalibName

Type of external PhotoCalib if doApplyExternalPhotoCalib is True. (str, default 'jointcal')

Allowed values:

'jointcal'
Use jointcal_photoCalib
'fgcm'
Use fgcm_photoCalib
'fgcm_tract'
Use fgcm_tract_photoCalib
'None'
Field is optional
externalSkyWcsName

Type of external SkyWcs if doApplyExternalSkyWcs is True. (str, default 'jointcal')

Allowed values:

'jointcal'
Use jointcal_wcs
'None'
Field is optional
history
instrumentName

Instrument name to associate with verification specifications: e.g. HSC, CFHT, DECAM (str)

makeJson

Whether to write JSON outputs. (bool, default True)

makePlots

Whether to write plot outputs. (bool, default True)

matchRadius

Match radius (arcseconds). (float, default 1.0)

metricsRepository

Repository to read metrics and specs from. (str, default 'verify_metrics')

outputPrefix

Root name for output files: the filter name is appended to this+’_’. (str, default 'matchedVisit')

safeSnr

Minimum median PSF signal-to-noise ratio for a match to be considered safe. (float, default 50)

skipTEx

Skip TEx calculations (useful for older catalogs that don’t have PsfShape measurements). (bool, default False)

verbose

More verbose output during validate calculations. (bool, default False)

Methods Documentation

compare(other, shortcut=True, rtol=1e-08, atol=1e-08, output=None)

Compare this configuration to another Config for equality.

Parameters:
other : lsst.pex.config.Config

Other Config object to compare against this config.

shortcut : bool, optional

If True, return as soon as an inequality is found. Default is True.

rtol : float, optional

Relative tolerance for floating point comparisons.

atol : float, optional

Absolute tolerance for floating point comparisons.

output : callable, optional

A callable that takes a string, used (possibly repeatedly) to report inequalities.

Returns:
isEqual : bool

True when the two lsst.pex.config.Config instances are equal. False if there is an inequality.

Notes

Unselected targets of RegistryField fields and unselected choices of ConfigChoiceField fields are not considered by this method.

Floating point comparisons are performed by numpy.allclose.

formatHistory(name, **kwargs)

Format a configuration field’s history to a human-readable format.

Parameters:
name : str

Name of a Field in this config.

kwargs

Keyword arguments passed to lsst.pex.config.history.format.

Returns:
history : str

A string containing the formatted history.

freeze()

Make this config, and all subconfigs, read-only.

items()

Get configurations as (field name, field value) pairs.

Returns:
items : list

List of tuples for each configuration. Tuple items are:

  1. Field name.
  2. Field value.
iteritems()

Iterate over (field name, field value) pairs.

Yields:
item : tuple

Tuple items are:

  1. Field name.
  2. Field value.
iterkeys()

Iterate over field names

Yields:
key : str

A field’s key (attribute name).

itervalues()

Iterate over field values.

Yields:
value : obj

A field value.

keys()

Get field names.

Returns:
names : list

List of lsst.pex.config.Field names.

load(filename, root='config')

Modify this config in place by executing the Python code in a configuration file.

Parameters:
filename : str

Name of the configuration file. A configuration file is Python module.

root : str, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

Deprecated: For backwards compatibility, older config files that use root="root" instead of root="config" will be loaded with a warning printed to sys.stderr. This feature will be removed at some point.

See also

lsst.pex.config.Config.loadFromStream, lsst.pex.config.Config.save, lsst.pex.config.Config.saveFromStream

loadFromStream(stream, root='config', filename=None)

Modify this Config in place by executing the Python code in the provided stream.

Parameters:
stream : file-like object, str, or compiled string

Stream containing configuration override code.

root : str, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

Deprecated: For backwards compatibility, older config files that use root="root" instead of root="config" will be loaded with a warning printed to sys.stderr. This feature will be removed at some point.

filename : str, optional

Name of the configuration file, or None if unknown or contained in the stream. Used for error reporting.

See also

lsst.pex.config.Config.load, lsst.pex.config.Config.save, lsst.pex.config.Config.saveFromStream

names()

Get all the field names in the config, recursively.

Returns:
names : list of str

Field names.

save(filename, root='config')

Save a Python script to the named file, which, when loaded, reproduces this config.

Parameters:
filename : str

Desination filename of this configuration.

root : str, optional

Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

saveToStream(outfile, root='config')

Save a configuration file to a stream, which, when loaded, reproduces this config.

Parameters:
outfile : file-like object

Destination file object write the config into. Accepts strings not bytes.

root

Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

setDefaults()

Subclass hook for computing defaults.

Notes

Derived Config classes that must compute defaults rather than using the Field instances’s defaults should do so here. To correctly use inherited defaults, implementations of setDefaults must call their base class’s setDefaults.

toDict()

Make a dictionary of field names and their values.

Returns:
dict_ : dict

Dictionary with keys that are Field names. Values are Field values.

Notes

This method uses the toDict method of individual fields. Subclasses of Field may need to implement a toDict method for this method to work.

update(**kw)

Update values of fields specified by the keyword arguments.

Parameters:
kw

Keywords are configuration field names. Values are configuration field values.

Notes

The __at and __label keyword arguments are special internal keywords. They are used to strip out any internal steps from the history tracebacks of the config. Do not modify these keywords to subvert a Config instance’s history.

Examples

This is a config with three fields:

>>> from lsst.pex.config import Config, Field
>>> class DemoConfig(Config):
...     fieldA = Field(doc='Field A', dtype=int, default=42)
...     fieldB = Field(doc='Field B', dtype=bool, default=True)
...     fieldC = Field(doc='Field C', dtype=str, default='Hello world')
...
>>> config = DemoConfig()

These are the default values of each field:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 42
fieldB: True
fieldC: 'Hello world'

Using this method to update fieldA and fieldC:

>>> config.update(fieldA=13, fieldC='Updated!')

Now the values of each field are:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 13
fieldB: True
fieldC: 'Updated!'
validate()

Validate the Config, raising an exception if invalid.

Raises:
lsst.pex.config.FieldValidationError

Raised if verification fails.

Notes

The base class implementation performs type checks on all fields by calling their validate methods.

Complex single-field validation can be defined by deriving new Field types. For convenience, some derived lsst.pex.config.Field-types (ConfigField and ConfigChoiceField) are defined in lsst.pex.config that handle recursing into subconfigs.

Inter-field relationships should only be checked in derived Config classes after calling this method, and base validation is complete.

values()

Get field values.

Returns:
values : list

List of field values.