butler¶

butler [OPTIONS] COMMAND [ARGS]...

Options

--log-level <LEVEL|COMPONENT=LEVEL>¶: The logging level. Supported levels are [CRITICAL|ERROR|WARNING|INFO|DEBUG]

--long-log¶: Make log messages appear in long format.

certify-calibrations¶

Certify calibrations in a repository.

REPO is the URI or path to an existing data repository root or configuration file.

butler certify-calibrations [OPTIONS] REPO INPUT_COLLECTION OUTPUT_COLLECTION
                            DATASET_TYPE_NAME

Options

--begin-date <begin_date>¶: ISO-8601 datetime (TAI) of the beginning of the validity range for the certified calibrations.

--end-date <end_date>¶: ISO-8601 datetime (TAI) of the end of the validity range for the certified calibrations.

--search-all-inputs¶: Search all children of the inputCollection if it is a CHAINED collection, instead of just the most recent one.

Arguments

REPO¶: Required argument

INPUT_COLLECTION¶: Required argument

OUTPUT_COLLECTION¶: Required argument

DATASET_TYPE_NAME¶: Required argument

See ‘butler –help’ for more options.

config-dump¶

Dump either a subset or full Butler configuration to standard output.

REPO is the URI or path to an existing data repository root or configuration file.

butler config-dump [OPTIONS] REPO

Options

-s, --subset <subset>¶: Subset of a configuration to report. This can be any key in the hierarchy such as ‘.datastore.root’ where the leading ‘.’ specified the delimiter for the hierarchy.

-p, --searchpath <TEXT ...>¶: Additional search paths to use for configuration overrides

--file <outfile>¶: Print the (possibly-expanded) configuration for a repository to a file, or to stdout by default.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

See ‘butler –help’ for more options.

config-validate¶

Validate the configuration files for a Gen3 Butler repository.

REPO is the URI or path to an existing data repository root or configuration file.

butler config-validate [OPTIONS] REPO

Options

-q, --quiet¶: Do not report individual failures.

-d, --dataset-type <dataset_type>¶: Specific DatasetType(s) to validate.

-i, --ignore <TEXT ...>¶: DatasetType(s) to ignore for validation.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

See ‘butler –help’ for more options.

convert¶

Convert a Butler gen 2 repository into a gen 3 repository.

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

butler convert [OPTIONS] REPO

Options

--gen2root <gen2root>¶: Required Root path of the gen 2 repo to be converted.

--skymap-name <skymap_name>¶: Name of the new gen3 skymap (e.g. ‘discrete/ci_hsc’).

--skymap-config <skymap_config>¶: Path to skymap config file defining the new gen3 skymap.

--calibs <calibs>¶: Path to the gen 2 calibration repo. It can be absolute or relative to gen2root.

--reruns <TEXT ...>¶: List of gen 2 reruns to convert.

-t, --transfer <transfer>¶

Mode to use to transfer files into the new repository.

Options:	auto\|link\|symlink\|hardlink\|copy\|move\|relsymlink\|direct

-j, --processes <processes>¶: Number of processes to use.

-C, --config-file <config_file>¶: Path to a ConvertRepoConfig override to be included after the Instrument config overrides are applied.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

See ‘butler –help’ for more options.

create¶

Create an empty Gen3 Butler repository.

REPO is the URI or path to the new repository. Will be created if it does not exist.

butler create [OPTIONS] REPO

Options

--seed-config <seed_config>¶: Path to an existing YAML config file to apply (on top of defaults).

--dimension-config <dimension_config>¶: Path to an existing YAML config file with dimension configuration.

--standalone¶: Include all defaults in the config file in the repo, insulating the repo from changes in package defaults.

--override¶: Allow values in the supplied config to override all repo settings.

-f, --outfile <outfile>¶: Name of output file to receive repository configuration. Default is to write butler.yaml into the specified repo.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

See ‘butler –help’ for more options.

define-visits¶

Define visits from exposures in the butler registry.

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

The name or fully-qualified class name of an instrument.

butler define-visits [OPTIONS] REPO INSTRUMENT

Options

-C, --config-file <config_file>¶: Path to a pex_config override to be included after the Instrument config overrides are applied.

--collections <TEXT ...>¶: The collections to be searched (in order) when reading datasets.

-j, --processes <processes>¶: Number of processes to use.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

INSTRUMENT¶: Required argument

See ‘butler –help’ for more options.

import¶

Import data into a butler repository.

REPO is the URI or path to the new repository. Will be created if it does not exist.

DIRECTORY is the folder containing dataset files.

butler import [OPTIONS] REPO DIRECTORY

Options

-t, --transfer <transfer>¶

The external data transfer mode.

Options:	auto\|link\|symlink\|hardlink\|copy\|move\|relsymlink\|direct

--export-file <export_file>¶: Name for the file that contains database information associated with the exported datasets. If this is not an absolute path, does not exist in the current working directory, and –dir is provided, it is assumed to be in that directory. Defaults to “export.yaml”.

-s, --skip-dimensions <TEXT ...>¶: Dimensions that should be skipped during import

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

DIRECTORY¶: Required argument

See ‘butler –help’ for more options.

ingest-raws¶

Ingest raw frames into from a directory into the butler registry

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

LOCATIONS specifies files to ingest and/or locations to search for files.

butler ingest-raws [OPTIONS] REPO LOCATIONS ...

Options

--regex <regex>¶: Regex string used to find files in directories listed in LOCATIONS. Searches for fits files by default.

-c, --config <TEXT=TEXT>¶: Config override, as a key-value pair.

-C, --config-file <config_file>¶: Path to a pex config override to be included after the Instrument config overrides are applied.

--output-run <output_run>¶: The name of the run datasets should be output to.

-t, --transfer <transfer>¶

The external data transfer mode.

Options:	auto\|link\|symlink\|hardlink\|copy\|move\|relsymlink\|direct

-j, --processes <processes>¶: Number of processes to use.

--ingest-task <ingest_task>¶: The fully qualified class name of the ingest task to use.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

LOCATIONS¶: Required argument(s)

See ‘butler –help’ for more options.

make-discrete-skymap¶

Define a discrete skymap from calibrated exposures in the butler registry.

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

The fully-qualified name of an Instrument subclass.

butler make-discrete-skymap [OPTIONS] REPO INSTRUMENT

Options

-C, --config-file <config_file>¶: Path to a pex_config override to be included after the Instrument config overridesare applied.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

--collections <TEXT ...>¶: Required The collections to be searched (in order) when reading datasets. This includes the seed skymap if –append is specified.

--out-collection <out_collection>¶

The collection to write the skymap to.

Default:	skymaps

--skymap-id <skymap_id>¶

The identifier of the skymap to write.

Default:	discrete

Arguments

REPO¶: Required argument

INSTRUMENT¶: Required argument

See ‘butler –help’ for more options.

prune-collection¶

Remove a collection and possibly prune datasets within it.

REPO is the URI or path to an existing data repository root or configuration file.

COLLECTION is the Name of the collection to remove. If this is a tagged or chained collection, datasets within the collection are not modified unless –unstore is passed. If this is a run collection, –purge and –unstore must be passed, and all datasets in it are fully removed from the data repository.

butler prune-collection [OPTIONS] REPO COLLECTION

Options

--purge¶: Permit RUN collections to be removed, fully removing datasets within them. Requires –unstore as an added precaution against accidental deletion. Must not be passed if the collection is not a RUN.

--unstore¶: Remove all datasets in the collection from all datastores in which they appear.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

COLLECTION¶: Required argument

See ‘butler –help’ for more options.

query-collections¶

Get the collections whose names match an expression.

REPO is the URI or path to an existing data repository root or configuration file.

GLOB is one or more glob-style expressions that fully or partially identify the collections to return.

butler query-collections [OPTIONS] REPO [GLOB] ...

Options

--collection-type <collection_type>¶

If provided, only list collections of this type.

Options:	RUN\|TAGGED\|CHAINED\|CALIBRATION

--chains <chains>¶

Affects how results are presented. TABLE lists each dataset in a row with chained datasets’ children listed in a Definition column. TREE lists children below their parent in tree form. FLATTEN lists all datasets, including child datasets in one list.Defaults to TABLE.

Options:	TABLE\|TREE\|FLATTEN

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

GLOB¶: Optional argument(s)

See ‘butler –help’ for more options.

query-data-ids¶

List the data IDs in a repository.

REPO is the URI or path to an existing data repository root or configuration file.

DIMENSIONS are the keys of the data IDs to yield, such as exposure, instrument, or tract. Will be expanded to include any dependencies.

butler query-data-ids [OPTIONS] REPO [DIMENSIONS] ...

Options

--collections <collections>¶: One or more expressions that fully or partially identify the collections to search for datasets.If not provided all datasets are returned.

--datasets <datasets>¶: An expression that fully or partially identifies dataset types that should constrain the yielded data IDs. For example, including “raw” here would constrain the yielded “instrument”, “exposure”, “detector”, and “physical_filter” values to only those for which at least one “raw” dataset exists in “collections”.

--where <where>¶: A string expression similar to a SQL WHERE clause. May involve any column of a dimension table or a dimension name as a shortcut for the primary key column of a dimension table.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

DIMENSIONS¶: Optional argument(s)

See ‘butler –help’ for more options.

query-dataset-types¶

Get the dataset types in a repository.

REPO is the URI or path to an existing data repository root or configuration file.

GLOB is one or more glob-style expressions that fully or partially identify the dataset types to return.

butler query-dataset-types [OPTIONS] REPO [GLOB] ...

Options

-v, --verbose¶: Include dataset type name, dimensions, and storage class in output.

--components, --no-components¶: For –components, apply all expression patterns to component dataset type names as well. For –no-components, never apply patterns to components. Default (where neither is specified) is to apply patterns to components only if their parent datasets were not matched by the expression. Fully-specified component datasets (str or DatasetType instances) are always included.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

GLOB¶: Optional argument(s)

See ‘butler –help’ for more options.

query-datasets¶

List the datasets in a repository.

REPO is the URI or path to an existing data repository root or configuration file.

GLOB is one or more glob-style expressions that fully or partially identify the dataset types to be queried.

butler query-datasets [OPTIONS] REPO [GLOB] ...

Options

--collections <collections>¶: One or more expressions that fully or partially identify the collections to search for datasets.If not provided all datasets are returned.

--where <where>¶: A string expression similar to a SQL WHERE clause. May involve any column of a dimension table or a dimension name as a shortcut for the primary key column of a dimension table.

--find-first¶: For each result data ID, only yield one DatasetRef of each DatasetType, from the first collection in which a dataset of that dataset type appears (according to the order of ‘collections’ passed in). If used, ‘collections’ must specify at least one expression and must not contain wildcards.

--show-uri¶: Show the dataset URI in results.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

GLOB¶: Optional argument(s)

See ‘butler –help’ for more options.

register-instrument¶

Add an instrument to the data repository.

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

The fully-qualified name of an Instrument subclass.

butler register-instrument [OPTIONS] REPO INSTRUMENT ...

Arguments

REPO¶: Required argument

INSTRUMENT¶: Required argument(s)

See ‘butler –help’ for more options.

remove-dataset-type¶

Remove a dataset type definition from a repository.

REPO is the URI or path to an existing data repository root or configuration file.

butler remove-dataset-type [OPTIONS] REPO DATASET_TYPE_NAME

Arguments

REPO¶: Required argument

DATASET_TYPE_NAME¶: Required argument

See ‘butler –help’ for more options.

write-curated-calibrations¶

Add an instrument’s curated calibrations to the data repository.

REPO is the URI or path to the gen3 repository. Will be created if it does not already exist

The fully-qualified name of an Instrument subclass.

butler write-curated-calibrations [OPTIONS] REPO INSTRUMENT

Options

--collection <collection>¶: Name of the calibration collection that associates datasets with validity ranges.

--suffix <suffix>¶: Name suffix to append (with an automatic delimiter) to all RUN collection names as well as the calibration collection name if it is not provided via –collection.

-@, --options-file <options_file>¶: URI to YAML file containing overrides of command line options. The YAML should be organized as a hierarchy with subcommand names at the top level options for that subcommand below.

Arguments

REPO¶: Required argument

INSTRUMENT¶: Required argument

See ‘butler –help’ for more options.

Navigation

butler¶

certify-calibrations¶

config-dump¶

config-validate¶

convert¶

create¶

define-visits¶

import¶

ingest-raws¶

make-discrete-skymap¶

prune-collection¶

query-collections¶

query-data-ids¶

query-dataset-types¶

query-datasets¶

register-instrument¶

remove-dataset-type¶

write-curated-calibrations¶