AssembleCcdTask¶

class lsst.ip.isr.AssembleCcdTask(**kwargs)¶

Bases: lsst.pipe.base.Task

@brief Assemble a set of amplifier images into a full detector size set of pixels.

@section ip_isr_assemble_Contents Contents

@ref ip_isr_assemble_Purpose

@ref ip_isr_assemble_Initialize

@ref ip_isr_assemble_IO

@ref ip_isr_assemble_Config

@ref ip_isr_assemble_Debug

@ref ip_isr_assemble_Example

@section ip_isr_assemble_Purpose Description

This task assembles sections of an image into a larger mosaic. The sub-sections are typically amplifier sections and are to be assembled into a detector size pixel grid. The assembly is driven by the entries in the raw amp information. The task can be configured to return a detector image with non-data (e.g. overscan) pixels included. The task can also renormalize the pixel values to a nominal gain of 1. The task also removes exposure metadata that has context in raw amps, but not in trimmed detectors (e.g. ‘BIASSEC’).

@section ip_isr_assemble_Initialize Task initialization

@copydoc __init__

@section ip_isr_assemble_IO Inputs/Outputs to the assembleCcd method

@copydoc assembleCcd

@section ip_isr_assemble_Config Configuration parameters

See @ref AssembleCcdConfig

@section ip_isr_assemble_Debug Debug variables

The command line task interface supports a flag @c -d to import @b debug.py from your @c PYTHONPATH; see <a href=”https://developer.lsst.io/stack/debug.html”>Debugging Tasks with lsstDebug</a> for more about @b debug.py files.

The available variables in AssembleCcdTask are: <DL>

<DT> @c display <DD> A dictionary containing debug point names as keys with frame number

as value. Valid keys are:

<DL>

<DT> assembledExposure <DD> display assembled exposure

</DL>

</DL>

@section ip_isr_assemble_Example A complete example of using AssembleCcdTask

<HR> To investigate the @ref ip_isr_assemble_Debug, put something like @code{.py} import lsstDebug def DebugInfo(name):

di = lsstDebug.getInfo(name) # N.b. lsstDebug.Info(name) would call

# us recursively

if name == “lsst.ip.isr.assembleCcdTask”:

di.display = {‘assembledExposure’:2}

return di

lsstDebug.Info = DebugInfo @endcode into your debug.py file and run runAssembleTask.py with the @c –debug flag.

Conversion notes:: Display code should be updated once we settle on a standard way of controlling what is displayed.

Methods Summary

`assembleCcd`(assembleInput)	!Assemble a set of amps into a single CCD size image @param[in] assembleInput – Either a dictionary of amp lsst.afw.image.Exposures or a single lsst.afw.image.Exposure containing all raw amps.
`emptyMetadata`()	Empty (clear) the metadata for this Task and all sub-Tasks.
`getFullMetadata`()	Get metadata for all tasks.
`getFullName`()	Get the task name as a hierarchical name including parent task names.
`getName`()	Get the name of the task.
`getTaskDict`()	Get a dictionary of all tasks as a shallow copy.
`makeField`(doc)	Make a `lsst.pex.config.ConfigurableField` for this task.
`makeSubtask`(name, **keyArgs)	Create a subtask as a new instance as the `name` attribute of this task.
`postprocessExposure`(outExposure, inExposure)	Set exposure non-image attributes, including wcs and metadata and display exposure (if requested)
`timer`(name, logLevel)	Context manager to log performance data for an arbitrary block of code.

Methods Documentation

assembleCcd(assembleInput)¶

!Assemble a set of amps into a single CCD size image @param[in] assembleInput – Either a dictionary of amp

lsst.afw.image.Exposures or a single lsst.afw.image.Exposure containing all raw amps. If a dictionary of amp exposures, the key should be the amp name.

@return assembledCcd – An lsst.afw.image.Exposure of the assembled: amp sections.

@throws TypeError with the following string:

<DL>

<DT> Expected either a dictionary of amp exposures or a single raw: exposure.
<DD> The input exposures to be assembled do not adhere to the: required format.

</DL>

@throws RuntimeError with the following string:

<DL>: <DT> No ccd detector found <DD> The detector set on the input exposure is not set.

</DL>

emptyMetadata() → None¶: Empty (clear) the metadata for this Task and all sub-Tasks.

getFullMetadata() → lsst.pipe.base._task_metadata.TaskMetadata¶

Get metadata for all tasks.

Returns:	metadata : `TaskMetadata` The keys are the full task name. Values are metadata for the top-level task and all subtasks, sub-subtasks, etc.

Notes

The returned metadata includes timing information (if @timer.timeMethod is used) and any metadata set by the task. The name of each item consists of the full task name with . replaced by :, followed by . and the name of the item, e.g.:

topLevelTaskName:subtaskName:subsubtaskName.itemName

using : in the full task name disambiguates the rare situation that a task has a subtask and a metadata item with the same name.

getFullName() → str¶

Get the task name as a hierarchical name including parent task names.

Returns:	fullName : `str` The full name consists of the name of the parent task and each subtask separated by periods. For example: The full name of top-level task “top” is simply “top”. The full name of subtask “sub” of top-level task “top” is “top.sub”. The full name of subtask “sub2” of subtask “sub” of top-level task “top” is “top.sub.sub2”.

getName() → str¶

Get the name of the task.

Returns:	taskName : `str` Name of the task.

See also

getFullName

getTaskDict() → Dict[str, weakref.ReferenceType[lsst.pipe.base.task.Task]]¶

Get a dictionary of all tasks as a shallow copy.

Returns:	taskDict : `dict` Dictionary containing full task name: task object for the top-level task and all subtasks, sub-subtasks, etc.

classmethod makeField(doc: str) → lsst.pex.config.configurableField.ConfigurableField¶

Make a lsst.pex.config.ConfigurableField for this task.

Parameters:	doc : `str` Help text for the field.
Returns:	configurableField : `lsst.pex.config.ConfigurableField` A `ConfigurableField` for this task.

Examples

Provides a convenient way to specify this task is a subtask of another task.

Here is an example of use:

class OtherTaskConfig(lsst.pex.config.Config):
    aSubtask = ATaskClass.makeField("brief description of task")

makeSubtask(name: str, **keyArgs) → None¶

Create a subtask as a new instance as the name attribute of this task.

Parameters:	name : `str` Brief name of the subtask. keyArgs Extra keyword arguments used to construct the task. The following arguments are automatically provided and cannot be overridden: “config”. “parentTask”.

Notes

The subtask must be defined by Task.config.name, an instance of ConfigurableField or RegistryField.

postprocessExposure(outExposure, inExposure)¶

Set exposure non-image attributes, including wcs and metadata and display exposure (if requested)

Call after assembling the pixels

@param[in,out] outExposure assembled exposure:

removes unwanted keywords
sets wcs, filter, and detector

@param[in] inExposure input exposure

timer(name: str, logLevel: int = 10) → Iterator[None]¶

Context manager to log performance data for an arbitrary block of code.

Parameters:	name : `str` Name of code being timed; data will be logged using item name: `Start` and `End`. logLevel A `logging` level constant.

Navigation

AssembleCcdTask¶