PropagateVisitFlagsTask

class lsst.pipe.tasks.propagateVisitFlags.PropagateVisitFlagsTask(schema, **kwargs)

Bases: lsst.pipe.base.Task

Task to propagate flags from single-frame measurements to coadd measurements.

Parameters:
schema : lsst.afw.table.Schema

The input schema for the reference source catalog, used to initialize the output schema.

**kwargs

Additional keyword arguments.

Deprecated since version v24.0: This task has been replaced with PropagateSourceFlagsTask

Methods Summary

emptyMetadata() Empty (clear) the metadata for this Task and all sub-Tasks.
getCcdInputs(coaddExposure) Convenience method to retrieve the CCD inputs table from a coadd exposure.
getFullMetadata() Get metadata for all tasks.
getFullName() Get the task name as a hierarchical name including parent task names.
getName() Get the name of the task.
getTaskDict() Get a dictionary of all tasks as a shallow copy.
makeField(doc) Make a lsst.pex.config.ConfigurableField for this task.
makeSubtask(name, **keyArgs) Create a subtask as a new instance as the name attribute of this task.
run(butler, coaddSources, ccdInputs, coaddWcs) Propagate flags from individual visit measurements to coadd.
timer(name, logLevel) Context manager to log performance data for an arbitrary block of code.

Methods Documentation

emptyMetadata() → None

Empty (clear) the metadata for this Task and all sub-Tasks.

static getCcdInputs(coaddExposure)

Convenience method to retrieve the CCD inputs table from a coadd exposure.

Parameters:
coaddExposure : lsst.afw.image.Exposure

The exposure we need to retrieve the CCD inputs table from.

Returns:
ccdInputs : ``

CCD inputs table from a coadd exposure.

getFullMetadata() → lsst.pipe.base._task_metadata.TaskMetadata

Get metadata for all tasks.

Returns:
metadata : TaskMetadata

The keys are the full task name. Values are metadata for the top-level task and all subtasks, sub-subtasks, etc.

Notes

The returned metadata includes timing information (if @timer.timeMethod is used) and any metadata set by the task. The name of each item consists of the full task name with . replaced by :, followed by . and the name of the item, e.g.:

topLevelTaskName:subtaskName:subsubtaskName.itemName

using : in the full task name disambiguates the rare situation that a task has a subtask and a metadata item with the same name.

getFullName() → str

Get the task name as a hierarchical name including parent task names.

Returns:
fullName : str

The full name consists of the name of the parent task and each subtask separated by periods. For example:

  • The full name of top-level task “top” is simply “top”.
  • The full name of subtask “sub” of top-level task “top” is “top.sub”.
  • The full name of subtask “sub2” of subtask “sub” of top-level task “top” is “top.sub.sub2”.
getName() → str

Get the name of the task.

Returns:
taskName : str

Name of the task.

See also

getFullName
getTaskDict() → Dict[str, weakref.ReferenceType[lsst.pipe.base.task.Task]]

Get a dictionary of all tasks as a shallow copy.

Returns:
taskDict : dict

Dictionary containing full task name: task object for the top-level task and all subtasks, sub-subtasks, etc.

classmethod makeField(doc: str) → lsst.pex.config.configurableField.ConfigurableField

Make a lsst.pex.config.ConfigurableField for this task.

Parameters:
doc : str

Help text for the field.

Returns:
configurableField : lsst.pex.config.ConfigurableField

A ConfigurableField for this task.

Examples

Provides a convenient way to specify this task is a subtask of another task.

Here is an example of use:

class OtherTaskConfig(lsst.pex.config.Config):
    aSubtask = ATaskClass.makeField("brief description of task")
makeSubtask(name: str, **keyArgs) → None

Create a subtask as a new instance as the name attribute of this task.

Parameters:
name : str

Brief name of the subtask.

keyArgs

Extra keyword arguments used to construct the task. The following arguments are automatically provided and cannot be overridden:

  • “config”.
  • “parentTask”.

Notes

The subtask must be defined by Task.config.name, an instance of ConfigurableField or RegistryField.

run(butler, coaddSources, ccdInputs, coaddWcs, visitCatalogs=None, wcsUpdates=None)

Propagate flags from individual visit measurements to coadd.

This requires matching the coadd source catalog to each of the catalogs from the inputs, and thresholding on the number of times a source is flagged on the input catalog. The threshold is made on the relative occurrence of the flag in each source. Flagging a source that is always flagged in inputs corresponds to a threshold of 1, while flagging a source that is flagged in any of the input corresponds to a threshold of 0. But neither of these extrema are really useful in practise.

Setting the threshold too high means that sources that are not consistently flagged (e.g., due to chip gaps) will not have the flag propagated. Setting that threshold too low means that random sources which are falsely flagged in the inputs will start to dominate. If in doubt, we suggest making this threshold relatively low, but not zero (e.g., 0.1 to 0.2 or so). The more confidence in the quality of the flagging, the lower the threshold can be.

The relative occurrence accounts for the edge of the field-of-view of the camera, but does not include chip gaps, bad or saturated pixels, etc.

Parameters:
butler : Unknown

Data butler, for retrieving the input source catalogs.

coaddSources : lsst.afw.image.SourceCatalog

Source catalog from the coadd.

ccdInputs : lsst.afw.table.ExposureCatalog

Table of CCDs that contribute to the coadd.

coaddWcs : lsst.afw.geom.SkyWcs

Wcs for coadd.

visitCatalogs : list of lsst.afw.image.SourceCatalog, optional

List of loaded source catalogs for each input ccd in the coadd. If provided this is used instead of this method loading in the catalogs itself.

wcsUpdates : list of lsst.afw.geom.SkyWcs, optional

If visitCatalogs is a list of ccd catalogs, this should be a list of updated wcs to apply.

Raises:
ValueError

Raised if any of the following occur: - A list of wcs updates for each catalog is not supplied in the wcsUpdates parameter and ccdInputs is a list of src catalogs. - The visitCatalogs and ccdInput parameters are both None.

timer(name: str, logLevel: int = 10) → Iterator[None]

Context manager to log performance data for an arbitrary block of code.

Parameters:
name : str

Name of code being timed; data will be logged using item name: Start and End.

logLevel

A logging level constant.

See also

timer.logInfo

Examples

Creating a timer context:

with self.timer("someCodeToTime"):
    pass  # code to time