WriteRecalibratedSourceTableTask¶

class lsst.pipe.tasks.postprocess.WriteRecalibratedSourceTableTask(*, config: PipelineTaskConfig | None = None, log: logging.Logger | LsstLogAdapter | None = None, initInputs: dict[str, Any] | None = None, **kwargs: Any)¶

Bases: WriteSourceTableTask

Write source table to DataFrame Parquet format.

Attributes Summary

canMultiprocess

Methods Summary

`addCalibColumns`(catalog, exposure, ...)	Add replace columns with calibs evaluated at each centroid
`attachCalibs`(inputRefs, skyMap, exposure[, ...])	Apply external calibrations to exposure per configuration
`emptyMetadata`()	Empty (clear) the metadata for this Task and all sub-Tasks.
`getClosestTract`(tracts, skyMap, bbox, wcs)	Find the index of the tract closest to detector from list of tractIds
`getFullMetadata`()	Get metadata for all tasks.
`getFullName`()	Get the task name as a hierarchical name including parent task names.
`getName`()	Get the name of the task.
`getTaskDict`()	Get a dictionary of all tasks as a shallow copy.
`makeField`(doc)	Make a `lsst.pex.config.ConfigurableField` for this task.
`makeSubtask`(name, **keyArgs)	Create a subtask as a new instance as the `name` attribute of this task.
`prepareCalibratedExposure`(exposure, detectorId)	Prepare a calibrated exposure and apply external calibrations if so configured.
`run`(catalog[, ccdVisitId])	Convert `src` catalog to DataFrame
`runQuantum`(butlerQC, inputRefs, outputRefs)	Do butler IO and transform to provide in memory objects for tasks `run` method.
`timer`(name[, logLevel])	Context manager to log performance data for an arbitrary block of code.

Attributes Documentation

canMultiprocess: ClassVar[bool] = True¶

Methods Documentation

addCalibColumns(catalog, exposure, idGenerator, **kwargs)¶

Add replace columns with calibs evaluated at each centroid

Add or replace ‘base_LocalWcs’ `base_LocalPhotoCalib’ columns in a a source catalog, by rerunning the plugins.

Parameters:

cataloglsst.afw.table.SourceCatalog: catalog to which calib columns will be added
exposurelsst.afw.image.exposure.Exposure: Exposure with attached PhotoCalibs and SkyWcs attributes to be reevaluated at local centroids. Pixels are not required.
idGeneratorlsst.meas.base.IdGenerator: Object that generates Source IDs and random seeds.
**kwargs: Additional keyword arguments are ignored to facilitate passing the same arguments to several methods.

Returns:

newCat: lsst.afw.table.SourceCatalog: Source Catalog with requested local calib columns

attachCalibs(inputRefs, skyMap, exposure, externalSkyWcsGlobalCatalog=None, externalSkyWcsTractCatalog=None, externalPhotoCalibGlobalCatalog=None, externalPhotoCalibTractCatalog=None, visitSummary=None, **kwargs)¶

Apply external calibrations to exposure per configuration

When multiple tract-level calibrations overlap, select the one with the center closest to detector.

Parameters:

inputRefsInputQuantizedConnection, for dataIds of: tract-level calibs.
skyMapBaseSkyMap: skyMap to lookup tract geometry and WCS.
exposurelsst.afw.image.exposure.Exposure: Input exposure to adjust calibrations.
externalSkyWcsGlobalCatalogExposureCatalog, optional: Exposure catalog with external skyWcs to be applied per config
externalSkyWcsTractCatalogExposureCatalog, optional: Exposure catalog with external skyWcs to be applied per config
externalPhotoCalibGlobalCatalogExposureCatalog, optional: Exposure catalog with external photoCalib to be applied per config
externalPhotoCalibTractCatalogExposureCatalog, optional: Exposure catalog with external photoCalib to be applied per config
visitSummarylsst.afw.table.ExposureCatalog, optional: Exposure catalog with all calibration objects. WCS and PhotoCalib are always applied if provided.
**kwargs: Additional keyword arguments are ignored to facilitate passing the same arguments to several methods.

Returns:

exposurelsst.afw.image.exposure.Exposure: Exposure with adjusted calibrations.

Deprecated since version v26: Deprecated in favor of exclusively using visit summaries; will be removed after v26.

emptyMetadata() → None¶: Empty (clear) the metadata for this Task and all sub-Tasks.

getClosestTract(tracts, skyMap, bbox, wcs)¶

Find the index of the tract closest to detector from list of tractIds

Parameters:

tracts: `list` [`int`]: Iterable of integer tractIds
skyMapBaseSkyMap: skyMap to lookup tract geometry and wcs
bboxBox2I: Detector bbox, center of which will compared to tract centers
wcsSkyWcs: Detector Wcs object to map the detector center to SkyCoord

Returns:

indexint

Deprecated since version v26: Deprecated in favor of exclusively using visit summaries; will be removed after v26.

getFullMetadata() → TaskMetadata¶

Get metadata for all tasks.

Returns:

metadataTaskMetadata: The keys are the full task name. Values are metadata for the top-level task and all subtasks, sub-subtasks, etc.

Notes

The returned metadata includes timing information (if @timer.timeMethod is used) and any metadata set by the task. The name of each item consists of the full task name with . replaced by :, followed by . and the name of the item, e.g.:

topLevelTaskName:subtaskName:subsubtaskName.itemName

using : in the full task name disambiguates the rare situation that a task has a subtask and a metadata item with the same name.

getFullName() → str¶

Get the task name as a hierarchical name including parent task names.

Returns:

fullNamestr

The full name consists of the name of the parent task and each subtask separated by periods. For example:

The full name of top-level task “top” is simply “top”.
The full name of subtask “sub” of top-level task “top” is “top.sub”.
The full name of subtask “sub2” of subtask “sub” of top-level task “top” is “top.sub.sub2”.

getName() → str¶

Get the name of the task.

Returns:

taskNamestr: Name of the task.

See also

getFullName: Get the full name of the task.

getTaskDict() → dict[str, weakref.ReferenceType[lsst.pipe.base.task.Task]]¶

Get a dictionary of all tasks as a shallow copy.

Returns:

taskDictdict: Dictionary containing full task name: task object for the top-level task and all subtasks, sub-subtasks, etc.

classmethod makeField(doc: str) → ConfigurableField¶

Make a lsst.pex.config.ConfigurableField for this task.

Parameters:

docstr: Help text for the field.

Returns:

configurableFieldlsst.pex.config.ConfigurableField: A ConfigurableField for this task.

Examples

Provides a convenient way to specify this task is a subtask of another task.

Here is an example of use:

class OtherTaskConfig(lsst.pex.config.Config):
    aSubtask = ATaskClass.makeField("brief description of task")

makeSubtask(name: str, **keyArgs: Any) → None¶

Create a subtask as a new instance as the name attribute of this task.

Parameters:

namestr

Brief name of the subtask.

**keyArgs

Extra keyword arguments used to construct the task. The following arguments are automatically provided and cannot be overridden:

config.
parentTask.

Notes

The subtask must be defined by Task.config.name, an instance of ConfigurableField or RegistryField.

prepareCalibratedExposure(exposure, detectorId, externalSkyWcsCatalog=None, externalPhotoCalibCatalog=None, visitSummary=None)¶

Prepare a calibrated exposure and apply external calibrations if so configured.

Parameters:

exposurelsst.afw.image.exposure.Exposure: Input exposure to adjust calibrations. May be empty.
detectorIdint: Detector ID associated with the exposure.
externalSkyWcsCataloglsst.afw.table.ExposureCatalog, optional: Exposure catalog with external skyWcs to be applied if config.doApplyExternalSkyWcs=True. Catalog uses the detector id for the catalog id, sorted on id for fast lookup. Deprecated in favor of visitSummary; will be removed after v26.
externalPhotoCalibCataloglsst.afw.table.ExposureCatalog, optional: Exposure catalog with external photoCalib to be applied if config.doApplyExternalPhotoCalib=True. Catalog uses the detector id for the catalog id, sorted on id for fast lookup. Deprecated in favor of visitSummary; will be removed after v26.
visitSummarylsst.afw.table.ExposureCatalog, optional: Exposure catalog with all calibration objects. WCS and PhotoCalib are always applied if visitSummary is provided and those components are not None.

Returns:

exposurelsst.afw.image.exposure.Exposure: Exposure with adjusted calibrations.

run(catalog, ccdVisitId=None, **kwargs)¶

Convert src catalog to DataFrame

Parameters:

catalog: `afwTable.SourceCatalog`: catalog to be converted
ccdVisitId: `int`: ccdVisitId to be added as a column
**kwargs: Additional keyword arguments are ignored as a convenience for subclasses that pass the same arguments to several different methods.

Returns:

resultStruct

table: DataFrame version of the input catalog

runQuantum(butlerQC, inputRefs, outputRefs)¶

Do butler IO and transform to provide in memory objects for tasks run method.

Parameters:

butlerQCQuantumContext: A butler which is specialized to operate in the context of a lsst.daf.butler.Quantum.
inputRefsInputQuantizedConnection: Datastructure whose attribute names are the names that identify connections defined in corresponding PipelineTaskConnections class. The values of these attributes are the lsst.daf.butler.DatasetRef objects associated with the defined input/prerequisite connections.
outputRefsOutputQuantizedConnection: Datastructure whose attribute names are the names that identify connections defined in corresponding PipelineTaskConnections class. The values of these attributes are the lsst.daf.butler.DatasetRef objects associated with the defined output connections.

timer(name: str, logLevel: int = 10) → Iterator[None]¶

Context manager to log performance data for an arbitrary block of code.

Parameters:

namestr: Name of code being timed; data will be logged using item name: Start and End.
logLevelint: A logging level constant.

Navigation

WriteRecalibratedSourceTableTask¶