PsfMatchTask¶

class lsst.ip.diffim.PsfMatchTask(*args, **kwargs)¶

Bases: lsst.pipe.base.Task

Base class for Psf Matching; should not be called directly

Notes

PsfMatchTask is a base class that implements the core functionality for matching the Psfs of two images using a spatially varying Psf-matching lsst.afw.math.LinearCombinationKernel. The Task requires the user to provide an instance of an lsst.afw.math.SpatialCellSet, filled with lsst.ip.diffim.KernelCandidate instances, and a list of lsst.afw.math.Kernels of basis shapes that will be used for the decomposition. If requested, the Task also performs background matching and returns the differential background model as an lsst.afw.math.Kernel.SpatialFunction.

Invoking the Task

As a base class, this Task is not directly invoked. However, run() methods that are implemented on derived classes will make use of the core _solve() functionality, which defines a sequence of lsst.afw.math.CandidateVisitor classes that iterate through the KernelCandidates, first building up a per-candidate solution and then building up a spatial model from the ensemble of candidates. Sigma clipping is performed using the mean and standard deviation of all kernel sums (to reject variable objects), on the per-candidate substamp diffim residuals (to indicate a bad choice of kernel basis shapes for that particular object), and on the substamp diffim residuals using the spatial kernel fit (to indicate a bad choice of spatial kernel order, or poor constraints on the spatial model). The _diagnostic() method logs information on the quality of the spatial fit, and also modifies the Task metadata.

Table 2 Quantities set in Metadata¶
Parameter	Description
`spatialConditionNum`	Condition number of the spatial kernel fit
`spatialKernelSum`	Kernel sum (10^{-0.4 * `Delta`; zeropoint}) of the spatial Psf-matching kernel
`ALBasisNGauss`	If using sum-of-Gaussian basis, the number of gaussians used
`ALBasisDegGauss`	If using sum-of-Gaussian basis, the deg of spatial variation of the Gaussians
`ALBasisSigGauss`	If using sum-of-Gaussian basis, the widths (sigma) of the Gaussians
`ALKernelSize`	If using sum-of-Gaussian basis, the kernel size
`NFalsePositivesTotal`	Total number of diaSources
`NFalsePositivesRefAssociated`	Number of diaSources that associate with the reference catalog
`NFalsePositivesRefAssociated`	Number of diaSources that associate with the source catalog
`NFalsePositivesUnassociated`	Number of diaSources that are orphans
`metric_MEAN`	Mean value of substamp diffim quality metrics across all KernelCandidates, for both the per-candidate (LOCAL) and SPATIAL residuals
`metric_MEDIAN`	Median value of substamp diffim quality metrics across all KernelCandidates, for both the per-candidate (LOCAL) and SPATIAL residuals
`metric_STDEV`	Standard deviation of substamp diffim quality metrics across all KernelCandidates, for both the per-candidate (LOCAL) and SPATIAL residuals

Debug variables

The lsst.pipe.base.CmdLineTask command line task interface supports a flag -d/–debug to import @b debug.py from your PYTHONPATH. The relevant contents of debug.py for this Task include:

import sys
import lsstDebug
def DebugInfo(name):
    di = lsstDebug.getInfo(name)
    if name == "lsst.ip.diffim.psfMatch":
        # enable debug output
        di.display = True
        # display mask transparency
        di.maskTransparency = 80
        # show all the candidates and residuals
        di.displayCandidates = True
        # show kernel basis functions
        di.displayKernelBasis = False
        # show kernel realized across the image
        di.displayKernelMosaic = True
        # show coefficients of spatial model
        di.plotKernelSpatialModel = False
        # show fixed and spatial coefficients and coefficient histograms
        di.plotKernelCoefficients = True
        # show the bad candidates (red) along with good (green)
        di.showBadCandidates = True
    return di
lsstDebug.Info = DebugInfo
lsstDebug.frame = 1

Note that if you want additional logging info, you may add to your scripts:

import lsst.log.utils as logUtils
logUtils.traceSetAt("ip.diffim", 4)

Methods Summary

`emptyMetadata`()	Empty (clear) the metadata for this Task and all sub-Tasks.
`getAllSchemaCatalogs`()	Get schema catalogs for all tasks in the hierarchy, combining the results into a single dict.
`getFullMetadata`()	Get metadata for all tasks.
`getFullName`()	Get the task name as a hierarchical name including parent task names.
`getName`()	Get the name of the task.
`getSchemaCatalogs`()	Get the schemas generated by this task.
`getTaskDict`()	Get a dictionary of all tasks as a shallow copy.
`makeField`(doc)	Make a `lsst.pex.config.ConfigurableField` for this task.
`makeSubtask`(name, **keyArgs)	Create a subtask as a new instance as the `name` attribute of this task.
`timer`(name[, logLevel])	Context manager to log performance data for an arbitrary block of code.

Methods Documentation

emptyMetadata()¶: Empty (clear) the metadata for this Task and all sub-Tasks.

getAllSchemaCatalogs()¶

Get schema catalogs for all tasks in the hierarchy, combining the results into a single dict.

Returns:	schemacatalogs : `dict` Keys are butler dataset type, values are a empty catalog (an instance of the appropriate `lsst.afw.table` Catalog type) for all tasks in the hierarchy, from the top-level task down through all subtasks.

Notes

This method may be called on any task in the hierarchy; it will return the same answer, regardless.

The default implementation should always suffice. If your subtask uses schemas the override Task.getSchemaCatalogs, not this method.

getFullMetadata()¶

Get metadata for all tasks.

Returns:	metadata : `lsst.daf.base.PropertySet` The `PropertySet` keys are the full task name. Values are metadata for the top-level task and all subtasks, sub-subtasks, etc.

Notes

The returned metadata includes timing information (if @timer.timeMethod is used) and any metadata set by the task. The name of each item consists of the full task name with . replaced by :, followed by . and the name of the item, e.g.:

topLevelTaskName:subtaskName:subsubtaskName.itemName

using : in the full task name disambiguates the rare situation that a task has a subtask and a metadata item with the same name.

getFullName()¶

Get the task name as a hierarchical name including parent task names.

Returns:	fullName : `str` The full name consists of the name of the parent task and each subtask separated by periods. For example: The full name of top-level task “top” is simply “top”. The full name of subtask “sub” of top-level task “top” is “top.sub”. The full name of subtask “sub2” of subtask “sub” of top-level task “top” is “top.sub.sub2”.

getName()¶

Get the name of the task.

Returns:	taskName : `str` Name of the task.

See also

Task.getAllSchemaCatalogs

Notes

Warning

Subclasses that use schemas must override this method. The default implementation returns an empty dict.

This method may be called at any time after the Task is constructed, which means that all task schemas should be computed at construction time, not when data is actually processed. This reflects the philosophy that the schema should not depend on the data.

Returning catalogs rather than just schemas allows us to save e.g. slots for SourceCatalog as well.

getTaskDict()¶

Get a dictionary of all tasks as a shallow copy.

Returns:	taskDict : `dict` Dictionary containing full task name: task object for the top-level task and all subtasks, sub-subtasks, etc.

classmethod makeField(doc)¶

Make a lsst.pex.config.ConfigurableField for this task.

Parameters:	doc : `str` Help text for the field.
Returns:	configurableField : `lsst.pex.config.ConfigurableField` A `ConfigurableField` for this task.

Examples

Provides a convenient way to specify this task is a subtask of another task.

Here is an example of use:

class OtherTaskConfig(lsst.pex.config.Config):
    aSubtask = ATaskClass.makeField("brief description of task")

makeSubtask(name, **keyArgs)¶

Create a subtask as a new instance as the name attribute of this task.

Parameters:	name : `str` Brief name of the subtask. keyArgs Extra keyword arguments used to construct the task. The following arguments are automatically provided and cannot be overridden: “config”. “parentTask”.

Notes

The subtask must be defined by Task.config.name, an instance of ConfigurableField or RegistryField.

timer(name, logLevel=10)¶

Context manager to log performance data for an arbitrary block of code.

Parameters:	name : `str` Name of code being timed; data will be logged using item name: `Start` and `End`. logLevel A `logging` level constant.

Navigation

PsfMatchTask¶