ForcedPhotCcdFromDataFrameConfig

class lsst.meas.base.ForcedPhotCcdFromDataFrameConfig(*args, **kw)

Bases: ForcedPhotCcdConfig

Attributes Summary

applyApCorr

Subtask to apply aperture corrections (ConfigurableInstance, default <class 'lsst.meas.base.applyApCorr.ApplyApCorrConfig'>)

catalogCalculation

Subtask to run catalogCalculation plugins on catalog (ConfigurableInstance, default <class 'lsst.meas.base.catalogCalculation.CatalogCalculationConfig'>)

coaddName

coadd name: typically one of deep or goodSeeing (str, default 'deep')

connections

Field which refers to a dynamically added configuration class which is based on a PipelineTaskConnections class.

doApCorr

Run subtask to apply aperture corrections (bool, default True)

doApplyExternalPhotoCalib

Whether to apply external photometric calibration via an lsst.afw.image.PhotoCalib object.

doApplyExternalSkyWcs

Whether to apply external astrometric calibration via an lsst.afw.geom.SkyWcs object.

doApplyFinalizedPsf

Whether to apply finalized psf models and aperture correction map.

doApplySkyCorr

Apply sky correction? (bool, default False)

doApplyUberCal

Apply meas_mosaic ubercal results to input calexps? Deprecated: Deprecated by DM-23352; use doApplyExternalPhotoCalib and doApplyExternalSkyWcs instead (bool, default False)

externalPhotoCalibName

Type of external PhotoCalib if doApplyExternalPhotoCalib is True.

externalSkyWcsName

Type of external SkyWcs if doApplyExternalSkyWcs is True.

footprintSource

Where to obtain footprints to install in the measurement catalog, prior to measurement.

history

includePhotoCalibVar

Add photometric calibration variance to warp variance plane? (bool, default False)

measurement

subtask to do forced measurement (ConfigurableInstance, default <class 'lsst.meas.base.forcedMeasurement.ForcedMeasurementConfig'>)

psfFootprintScaling

Scaling factor to apply to the PSF shape when footprintSource='psf' (ignored otherwise).

references

subtask to retrieve reference source catalog (ConfigurableInstance, default <class 'lsst.meas.base.references.MultiBandReferencesConfig'>)

saveLogOutput

Flag to enable/disable saving of log output for a task, enabled by default.

saveMetadata

Flag to enable/disable metadata saving for a task, enabled by default.

useGlobalExternalPhotoCalib

When using doApplyExternalPhotoCalib, use 'global' calibrations that are not run per-tract.

useGlobalExternalSkyWcs

When using doApplyExternalSkyWcs, use 'global' calibrations that are not run per-tract.

Methods Summary

compare(other[, shortcut, rtol, atol, output])

Compare this configuration to another Config for equality.

formatHistory(name, **kwargs)

Format a configuration field's history to a human-readable format.

freeze()

Make this config, and all subconfigs, read-only.

items()

Get configurations as (field name, field value) pairs.

keys()

Get field names.

load(filename[, root])

Modify this config in place by executing the Python code in a configuration file.

loadFromStream(stream[, root, filename])

Modify this Config in place by executing the Python code in the provided stream.

loadFromString(code[, root, filename])

Modify this Config in place by executing the Python code in the provided string.

names()

Get all the field names in the config, recursively.

save(filename[, root])

Save a Python script to the named file, which, when loaded, reproduces this config.

saveToStream(outfile[, root, skipImports])

Save a configuration file to a stream, which, when loaded, reproduces this config.

saveToString([skipImports])

Return the Python script form of this configuration as an executable string.

setDefaults()

Subclass hook for computing defaults.

toDict()

Make a dictionary of field names and their values.

update(**kw)

Update values of fields specified by the keyword arguments.

validate()

Validate the Config, raising an exception if invalid.

values()

Get field values.

Attributes Documentation

applyApCorr

Subtask to apply aperture corrections (ConfigurableInstance, default <class 'lsst.meas.base.applyApCorr.ApplyApCorrConfig'>)

catalogCalculation

Subtask to run catalogCalculation plugins on catalog (ConfigurableInstance, default <class 'lsst.meas.base.catalogCalculation.CatalogCalculationConfig'>)

coaddName

coadd name: typically one of deep or goodSeeing (str, default 'deep')

connections: pexConfig.ConfigField

Field which refers to a dynamically added configuration class which is based on a PipelineTaskConnections class.

doApCorr

Run subtask to apply aperture corrections (bool, default True)

doApplyExternalPhotoCalib

Whether to apply external photometric calibration via an lsst.afw.image.PhotoCalib object. Uses the externalPhotoCalibName field to determine which calibration to load. (bool, default False)

doApplyExternalSkyWcs

Whether to apply external astrometric calibration via an lsst.afw.geom.SkyWcs object. Uses externalSkyWcsName field to determine which calibration to load. (bool, default False)

doApplyFinalizedPsf

Whether to apply finalized psf models and aperture correction map. (bool, default False)

doApplySkyCorr

Apply sky correction? (bool, default False)

doApplyUberCal

Apply meas_mosaic ubercal results to input calexps? Deprecated: Deprecated by DM-23352; use doApplyExternalPhotoCalib and doApplyExternalSkyWcs instead (bool, default False)

externalPhotoCalibName

Type of external PhotoCalib if doApplyExternalPhotoCalib is True. Unused for Gen3 middleware. (str, default 'jointcal')

Allowed values:

'jointcal'

Use jointcal_photoCalib

'fgcm'

Use fgcm_photoCalib

'fgcm_tract'

Use fgcm_tract_photoCalib

'None'

Field is optional

externalSkyWcsName

Type of external SkyWcs if doApplyExternalSkyWcs is True. Unused for Gen3 middleware. (str, default 'jointcal')

Allowed values:

'jointcal'

Use jointcal_wcs

'None'

Field is optional

footprintSource

Where to obtain footprints to install in the measurement catalog, prior to measurement. (str, default 'transformed')

Allowed values:

'transformed'

Transform footprints from the reference catalog (downgrades HeavyFootprints).

'psf'

Use the scaled shape of the PSF at the position of each source (does not generate HeavyFootprints).

'None'

Field is optional

history

Read-only history.

includePhotoCalibVar

Add photometric calibration variance to warp variance plane? (bool, default False)

measurement

subtask to do forced measurement (ConfigurableInstance, default <class 'lsst.meas.base.forcedMeasurement.ForcedMeasurementConfig'>)

psfFootprintScaling

Scaling factor to apply to the PSF shape when footprintSource=’psf’ (ignored otherwise). (float, default 3.0)

references

subtask to retrieve reference source catalog (ConfigurableInstance, default <class 'lsst.meas.base.references.MultiBandReferencesConfig'>)

saveLogOutput

Flag to enable/disable saving of log output for a task, enabled by default. (bool, default True)

saveMetadata

Flag to enable/disable metadata saving for a task, enabled by default. (bool, default True)

useGlobalExternalPhotoCalib

When using doApplyExternalPhotoCalib, use ‘global’ calibrations that are not run per-tract. When False, use per-tract photometric calibration files. (bool, default True)

useGlobalExternalSkyWcs

When using doApplyExternalSkyWcs, use ‘global’ calibrations that are not run per-tract. When False, use per-tract wcs files. (bool, default False)

Methods Documentation

compare(other, shortcut=True, rtol=1e-08, atol=1e-08, output=None)

Compare this configuration to another Config for equality.

Parameters:
otherlsst.pex.config.Config

Other Config object to compare against this config.

shortcutbool, optional

If True, return as soon as an inequality is found. Default is True.

rtolfloat, optional

Relative tolerance for floating point comparisons.

atolfloat, optional

Absolute tolerance for floating point comparisons.

outputcallable, optional

A callable that takes a string, used (possibly repeatedly) to report inequalities.

Returns:
isEqualbool

True when the two lsst.pex.config.Config instances are equal. False if there is an inequality.

Notes

Unselected targets of RegistryField fields and unselected choices of ConfigChoiceField fields are not considered by this method.

Floating point comparisons are performed by numpy.allclose.

formatHistory(name, **kwargs)

Format a configuration field’s history to a human-readable format.

Parameters:
namestr

Name of a Field in this config.

kwargs

Keyword arguments passed to lsst.pex.config.history.format.

Returns:
historystr

A string containing the formatted history.

freeze()

Make this config, and all subconfigs, read-only.

items()

Get configurations as (field name, field value) pairs.

Returns:
itemsdict_items

Iterator of tuples for each configuration. Tuple items are:

  1. Field name.

  2. Field value.

keys()

Get field names.

Returns:
namesdict_keys

List of lsst.pex.config.Field names.

See also

lsst.pex.config.Config.iterkeys
load(filename, root='config')

Modify this config in place by executing the Python code in a configuration file.

Parameters:
filenamestr

Name of the configuration file. A configuration file is Python module.

rootstr, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

loadFromStream(stream, root='config', filename=None)

Modify this Config in place by executing the Python code in the provided stream.

Parameters:
streamfile-like object, str, bytes, or compiled string

Stream containing configuration override code. If this is a code object, it should be compiled with mode="exec".

rootstr, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

filenamestr, optional

Name of the configuration file, or None if unknown or contained in the stream. Used for error reporting.

Notes

For backwards compatibility reasons, this method accepts strings, bytes and code objects as well as file-like objects. New code should use loadFromString instead for most of these types.

loadFromString(code, root='config', filename=None)

Modify this Config in place by executing the Python code in the provided string.

Parameters:
codestr, bytes, or compiled string

Stream containing configuration override code.

rootstr, optional

Name of the variable in file that refers to the config being overridden.

For example, the value of root is "config" and the file contains:

config.myField = 5

Then this config’s field myField is set to 5.

filenamestr, optional

Name of the configuration file, or None if unknown or contained in the stream. Used for error reporting.

names()

Get all the field names in the config, recursively.

Returns:
nameslist of str

Field names.

save(filename, root='config')

Save a Python script to the named file, which, when loaded, reproduces this config.

Parameters:
filenamestr

Desination filename of this configuration.

rootstr, optional

Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

saveToStream(outfile, root='config', skipImports=False)

Save a configuration file to a stream, which, when loaded, reproduces this config.

Parameters:
outfilefile-like object

Destination file object write the config into. Accepts strings not bytes.

root

Name to use for the root config variable. The same value must be used when loading (see lsst.pex.config.Config.load).

skipImportsbool, optional

If True then do not include import statements in output, this is to support human-oriented output from pipetask where additional clutter is not useful.

saveToString(skipImports=False)

Return the Python script form of this configuration as an executable string.

Parameters:
skipImportsbool, optional

If True then do not include import statements in output, this is to support human-oriented output from pipetask where additional clutter is not useful.

Returns:
codestr

A code string readable by loadFromString.

setDefaults()

Subclass hook for computing defaults.

Notes

Derived Config classes that must compute defaults rather than using the Field instances’s defaults should do so here. To correctly use inherited defaults, implementations of setDefaults must call their base class’s setDefaults.

toDict()

Make a dictionary of field names and their values.

Returns:
dict_dict

Dictionary with keys that are Field names. Values are Field values.

Notes

This method uses the toDict method of individual fields. Subclasses of Field may need to implement a toDict method for this method to work.

update(**kw)

Update values of fields specified by the keyword arguments.

Parameters:
kw

Keywords are configuration field names. Values are configuration field values.

Notes

The __at and __label keyword arguments are special internal keywords. They are used to strip out any internal steps from the history tracebacks of the config. Do not modify these keywords to subvert a Config instance’s history.

Examples

This is a config with three fields:

>>> from lsst.pex.config import Config, Field
>>> class DemoConfig(Config):
...     fieldA = Field(doc='Field A', dtype=int, default=42)
...     fieldB = Field(doc='Field B', dtype=bool, default=True)
...     fieldC = Field(doc='Field C', dtype=str, default='Hello world')
...
>>> config = DemoConfig()

These are the default values of each field:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 42
fieldB: True
fieldC: 'Hello world'

Using this method to update fieldA and fieldC:

>>> config.update(fieldA=13, fieldC='Updated!')

Now the values of each field are:

>>> for name, value in config.iteritems():
...     print(f"{name}: {value}")
...
fieldA: 13
fieldB: True
fieldC: 'Updated!'
validate()

Validate the Config, raising an exception if invalid.

Raises:
lsst.pex.config.FieldValidationError

Raised if verification fails.

Notes

The base class implementation performs type checks on all fields by calling their validate methods.

Complex single-field validation can be defined by deriving new Field types. For convenience, some derived lsst.pex.config.Field-types (ConfigField and ConfigChoiceField) are defined in lsst.pex.config that handle recursing into subconfigs.

Inter-field relationships should only be checked in derived Config classes after calling this method, and base validation is complete.

values()

Get field values.

Returns:
valuesdict_values

Iterator of field values.