BaseReferencesTask¶
-
class
lsst.meas.base.
BaseReferencesTask
(butler=None, schema=None, **kwargs)¶ Bases:
lsst.pipe.base.Task
Base class for forced photometry subtask that fetches reference sources.
Parameters: - schema :
lsst.afw.table.Schema
, optional The schema of the reference catalog.
- butler :
lsst.daf.persistence.butler.Butler
, optional A butler that will allow the task to load its schema from disk.
Notes
At least one of the
schema
andbutler
arguments must be present; if both are,schema
takes precedence.BaseReferencesTask
defines the required API for the references task, which consists of:getSchema(butler)
fetchInPatches(butler, tract, filter, patchList)
fetchInBox(self, butler, tract, filter, bbox, wcs)
- the
removePatchOverlaps
config option
It also provides the
subset
method, which may be of use to derived classes when reimplementingfetchInBox
.Methods Summary
emptyMetadata
()Empty (clear) the metadata for this Task and all sub-Tasks. fetchInBox
(dataRef, bbox, wcs)Return reference sources within a given bounding box. fetchInPatches
(dataRef, patchList)Return reference sources within one or more patches. getAllSchemaCatalogs
()Get schema catalogs for all tasks in the hierarchy, combining the results into a single dict. getFullMetadata
()Get metadata for all tasks. getFullName
()Get the task name as a hierarchical name including parent task names. getName
()Get the name of the task. getSchema
(butler)Return the schema for the reference sources. getSchemaCatalogs
()Get the schemas generated by this task. getTaskDict
()Get a dictionary of all tasks as a shallow copy. getWcs
(dataRef)Return the WCS for reference sources. makeField
(doc)Make a lsst.pex.config.ConfigurableField
for this task.makeSubtask
(name, **keyArgs)Create a subtask as a new instance as the name
attribute of this task.subset
(sources, bbox, wcs)Filter a list of sources to only those within the bounding box. timer
(name[, logLevel])Context manager to log performance data for an arbitrary block of code. Methods Documentation
-
emptyMetadata
()¶ Empty (clear) the metadata for this Task and all sub-Tasks.
-
fetchInBox
(dataRef, bbox, wcs)¶ Return reference sources within a given bounding box.
Reference sources are selected if they overlap a region defined by a pixel-coordinate bounding box and corresponding WCS.
Parameters: - dataRef :
lsst.daf.persistence.ButlerDataRef
Butler data reference. The implied data ID must contain the
tract
key.- bbox :
lsst.afw.geom.Box2I
orlsst.afw.geom.Box2D
Defines the selection region in pixel coordinates.
- wcs :
lsst.afw.image.SkyWcs
Maps
bbox
to sky coordinates.
Returns: - sources : iterable of
SourceRecord
Reference sources. May be any Python iterable, including a lazy iterator.
Notes
The returned set of sources should be complete and close to minimal.
- dataRef :
-
fetchInPatches
(dataRef, patchList)¶ Return reference sources within one or more patches.
Parameters: - dataRef :
lsst.daf.persistence.ButlerDataRef
Butler data reference. The implied data ID must contain the
tract
key.- patchList :
list
oflsst.skymap.PatchInfo
Patches for which to fetch reference sources.
Returns: - sources : iterable of
SourceRecord
Reference sources. May be any Python iterable, including a lazy iterator.
Notes
The returned set of sources should be complete and close to minimal.
If
config.removePatchOverlaps
isTrue
, only sources within each patch’s “inner” bounding box should be returned.- dataRef :
-
getAllSchemaCatalogs
()¶ Get schema catalogs for all tasks in the hierarchy, combining the results into a single dict.
Returns: - schemacatalogs :
dict
Keys are butler dataset type, values are a empty catalog (an instance of the appropriate
lsst.afw.table
Catalog type) for all tasks in the hierarchy, from the top-level task down through all subtasks.
Notes
This method may be called on any task in the hierarchy; it will return the same answer, regardless.
The default implementation should always suffice. If your subtask uses schemas the override
Task.getSchemaCatalogs
, not this method.- schemacatalogs :
-
getFullMetadata
()¶ Get metadata for all tasks.
Returns: - metadata :
lsst.daf.base.PropertySet
The
PropertySet
keys are the full task name. Values are metadata for the top-level task and all subtasks, sub-subtasks, etc.
Notes
The returned metadata includes timing information (if
@timer.timeMethod
is used) and any metadata set by the task. The name of each item consists of the full task name with.
replaced by:
, followed by.
and the name of the item, e.g.:topLevelTaskName:subtaskName:subsubtaskName.itemName
using
:
in the full task name disambiguates the rare situation that a task has a subtask and a metadata item with the same name.- metadata :
-
getFullName
()¶ Get the task name as a hierarchical name including parent task names.
Returns: - fullName :
str
The full name consists of the name of the parent task and each subtask separated by periods. For example:
- The full name of top-level task “top” is simply “top”.
- The full name of subtask “sub” of top-level task “top” is “top.sub”.
- The full name of subtask “sub2” of subtask “sub” of top-level task “top” is “top.sub.sub2”.
- fullName :
-
getSchema
(butler)¶ Return the schema for the reference sources.
Parameters: - butler :
lsst.daf.persistence.butler.Butler
Data butler from which the schema will be fetched.
Notes
Must be available even before any data has been processed.
- butler :
-
getSchemaCatalogs
()¶ Get the schemas generated by this task.
Returns: - schemaCatalogs :
dict
Keys are butler dataset type, values are an empty catalog (an instance of the appropriate
lsst.afw.table
Catalog type) for this task.
See also
Task.getAllSchemaCatalogs
Notes
Warning
Subclasses that use schemas must override this method. The default implementation returns an empty dict.
This method may be called at any time after the Task is constructed, which means that all task schemas should be computed at construction time, not when data is actually processed. This reflects the philosophy that the schema should not depend on the data.
Returning catalogs rather than just schemas allows us to save e.g. slots for SourceCatalog as well.
- schemaCatalogs :
-
getTaskDict
()¶ Get a dictionary of all tasks as a shallow copy.
Returns: - taskDict :
dict
Dictionary containing full task name: task object for the top-level task and all subtasks, sub-subtasks, etc.
- taskDict :
-
getWcs
(dataRef)¶ Return the WCS for reference sources.
Parameters: - dataRef :
lsst.daf.persistence.ButlerDataRef
The data reference from which the WCS will be fetched. This must include the tract in its dataId.
- dataRef :
-
classmethod
makeField
(doc)¶ Make a
lsst.pex.config.ConfigurableField
for this task.Parameters: - doc :
str
Help text for the field.
Returns: - configurableField :
lsst.pex.config.ConfigurableField
A
ConfigurableField
for this task.
Examples
Provides a convenient way to specify this task is a subtask of another task.
Here is an example of use:
class OtherTaskConfig(lsst.pex.config.Config): aSubtask = ATaskClass.makeField("brief description of task")
- doc :
-
makeSubtask
(name, **keyArgs)¶ Create a subtask as a new instance as the
name
attribute of this task.Parameters: - name :
str
Brief name of the subtask.
- keyArgs
Extra keyword arguments used to construct the task. The following arguments are automatically provided and cannot be overridden:
- “config”.
- “parentTask”.
Notes
The subtask must be defined by
Task.config.name
, an instance ofConfigurableField
orRegistryField
.- name :
-
subset
(sources, bbox, wcs)¶ Filter a list of sources to only those within the bounding box.
Parameters: - sources : iterable of
SourceRecord
Reference sources. May be any Python iterable, including a lazy iterator.
- bbox :
lsst.afw.geom.Box2I
orlsst.afw.geom.Box2D
Defines the selection region.
- wcs :
lsst.afw.image.SkyWcs
Maps
bbox
to sky coordinates.
Returns: - sources : iterable of
SourceRecord
Filtered sources. May be any Python iterable, including a lazy iterator.
Notes
Instead of filtering sources directly via their positions, we filter based on the positions of parent objects, then include or discard all children based on their parent’s status. This is necessary to support replacement with noise in measurement, which requires all child sources have their parent present.
This is not a part of the required
BaseReferencesTask
interface; it’s a convenience function used in implementingfetchInBox
that may be of use to subclasses.- sources : iterable of
-
timer
(name, logLevel=10000)¶ Context manager to log performance data for an arbitrary block of code.
Parameters: - name :
str
Name of code being timed; data will be logged using item name:
Start
andEnd
.- logLevel
A
lsst.log
level constant.
See also
timer.logInfo
Examples
Creating a timer context:
with self.timer("someCodeToTime"): pass # code to time
- name :
- schema :